CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78564	Canola	plastid	94.41	95.64
CDX69600	Canola	plastid	84.52	81.37
CDY58407	Canola	plastid	84.3	81.16
AT5G14170.1	Thale cress	plastid	87.31	76.03
Os04t0382100-01	Rice	nucleus	49.46	66.47
VIT_14s0068g02140.t01	Wine grape	plastid	74.19	62.96
Zm00001d045433_P001	Maize	plastid	32.9	62.2
KRH57679	Soybean	nucleus	72.04	61.69
KRG94254	Soybean	nucleus	71.18	60.96
GSMUA_Achr9P01520_001	Banana	plastid	63.87	60.24
KRG94519	Soybean	nucleus	61.29	59.62
GSMUA_Achr6P20740_001	Banana	plastid	63.66	57.25
Solyc02g068100.2.1	Tomato	nucleus	66.67	56.99
KRH06950	Soybean	plastid	47.1	56.01
TraesCS2D01G280300.1	Wheat	plastid	63.01	55.92
TraesCS2B01G298800.1	Wheat	plastid	63.01	55.81
TraesCS2A01G281500.1	Wheat	nucleus	63.01	55.7
KXG36804	Sorghum	plastid	62.37	54.51
Zm00001d007039_P001	Maize	plastid	62.15	54.32
Zm00001d022322_P001	Maize	plastid	61.94	54.14
HORVU2Hr1G068970.1	Barley	cytosol	59.35	53.28
PGSC0003DMT400017831	Potato	nucleus, plastid	64.73	52.71

Protein Annotations

Gene3D:1.10.245.10	MapMan:12.4.2.2	EnsemblPlants:CDX70546	ProteinID:CDX70546	ProteinID:CDX70546.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00140383001	InterPro:IPR036885	PFAM:PF02201	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
UniParc:UPI0004EEE117	SEG:seg	:	:	:	:

Description

BnaC03g06300D

Coordinates

chrLK031791:-:968168..970452

Molecular Weight (calculated)

52152.5 Da

IEP (calculated)

9.859

GRAVY (calculated)

-0.487

Length

465 amino acids

Sequence
(BLAST)

001: MSGNNNNPQG SAPSPFRSPG MMPSASVPGG FAQSHMATNF QAPFQFTQAQ AMAQAQLMRP PSGFPNNTIS PMRTMELTPA PRKKKQKLPE KSLQERVAAI
101: LPESALYTQL LEFESRVDAA LSRKKVDIQE ALKNPPCVQK TLRVYVFNTY ANQNNNPNAD PPTWTLKIVG RILEDGVDPD QPGFVEKANP LLPKFSSFFK
201: KVQVSLDQRL YPDSPLITWE NSRSPAPQEG FEIKRKGNQE FAATIRLEMN YLPEKFKLST ALMDVLGIEV ETRPRIIAAI WHYVKARKLQ SPNDPSFFNC
301: DAALQKVFGE QKLKFTMVSQ KLSHHLSPPP PIHLEHKIKL SGSSPAVSAC YDVLVDVPVT IQRDLNNLLA KAEKNKEIEA CDEAICAAIR KIHEHRRRRA
401: FFLGFSQSPV EFVNALMESQ SKDLKVVAGE ASRNAERERG SDFFNQPWVE DAVIRYLNRR PAAGN

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.