Factsheet for TraesCS2A01G281500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G280300.1	Wheat	plastid	99.62	100.0
TraesCS2B01G298800.1	Wheat	plastid	99.62	99.81
Os04t0382100-01	Rice	nucleus	61.03	92.77
Zm00001d045433_P001	Maize	plastid	42.21	90.24
KXG36804	Sorghum	plastid	86.88	85.9
Zm00001d007039_P001	Maize	plastid	86.12	85.15
Zm00001d022322_P001	Maize	plastid	81.37	80.45
HORVU2Hr1G068970.1	Barley	cytosol	78.52	79.73
GSMUA_Achr9P01520_001	Banana	plastid	67.68	72.21
VIT_17s0000g01500.t01	Wine grape	cytosol	53.42	70.43
GSMUA_Achr6P20740_001	Banana	plastid	68.63	69.83
CDX78564	Canola	plastid	55.89	64.05
CDY58407	Canola	plastid	58.56	63.77
CDX69600	Canola	plastid	58.17	63.35
AT3G01890.1	Thale cress	plastid	54.94	63.1
CDX70546	Canola	plastid	55.7	63.01
VIT_14s0068g02140.t01	Wine grape	plastid	63.69	61.13
AT5G14170.1	Thale cress	plastid	61.79	60.86
KRH57679	Soybean	nucleus	61.22	59.3
KRG94254	Soybean	nucleus	61.03	59.12
Bra006242.1-P	Field mustard	plastid	55.89	58.45
KRG94519	Soybean	nucleus	51.33	56.49
Solyc02g068100.2.1	Tomato	nucleus	56.84	54.96
KRH57226	Soybean	nucleus	52.28	53.61
KRH03955	Soybean	nucleus	52.47	52.57
KRH06950	Soybean	plastid	38.97	52.43
PGSC0003DMT400017831	Potato	nucleus, plastid	55.89	51.49
PGSC0003DMT400039420	Potato	plastid	50.57	50.57
Solyc03g111250.2.1	Tomato	nucleus	50.38	50.38
KRH63759	Soybean	plastid	50.0	49.72
KRH54192	Soybean	plastid	49.24	48.59

Protein Annotations

EnsemblPlants:TraesCS2A01G281500.1	EnsemblPlantsGene:TraesCS2A01G281500	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF22
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:12.4.2.2	:

Description

No Description!

Coordinates

chr2A:+:470430712..470432403

Molecular Weight (calculated)

57570.9 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.504

Length

526 amino acids

Sequence
(BLAST)

001: MATGGNPNPN ANPGQPRPQQ QPPGSSPATP HNHMRPPTLA GSPFQGLFHT PPSHNPAFQI HMGAASSPQT PLMAAAAAAA SAAASAKRPP QKPPSRPPAP
101: TSNAAAAASM AAAYKAANSG SVDLTPAARR NKKRKLPEKQ LPDRVAALLP ESALYTQLLE FEARVDAALA RKKVDIQEAL KTPPSLQRTL RIYVFNTFAN
201: QAPRTIPPPK NGDPPTWSLK IIGRVLEDGA ELDPASVVPK HNPVYPKFSS FFKRVTIALD SSLYPENPLI VWENARSAAP QEGFEVKRKG DKEFLANIRL
301: EMNYNPEKFK LSQPLMEVLG VEVDTRARVI AALWQYIKAK KLQNPSDPSY FMCDPQLKKV FGEDKMRFAM LSQKISQHLA PPPPINLEHK IKLSGNGANS
401: SACYDVLVDV PFPLQKEMTA FLANTEKHKD IEACDEVISA SIKKIHEHRR RRAFFLGFSQ SPVEFINALI ASQSKDLKLV AGEASRNIER ERRADFYNQP
501: WVEDAVIRYL NRKPPGGNDG PGAGGS

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.