Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58407 | Canola | plastid | 81.27 | 89.86 |
| CDX69600 | Canola | plastid | 81.09 | 89.65 |
| CDX78564 | Canola | plastid | 75.66 | 88.02 |
| CDX70546 | Canola | plastid | 76.03 | 87.31 |
| Bra006242.1-P | Field mustard | plastid | 79.21 | 84.1 |
| AT3G01890.1 | Thale cress | plastid | 64.79 | 75.55 |
| VIT_14s0068g02140.t01 | Wine grape | plastid | 76.03 | 74.09 |
| KRH57679 | Soybean | nucleus | 74.91 | 73.66 |
| KRG94254 | Soybean | nucleus | 74.72 | 73.48 |
| Os04t0382100-01 | Rice | nucleus | 47.57 | 73.41 |
| Solyc02g068100.2.1 | Tomato | nucleus | 69.48 | 68.2 |
| Zm00001d045433_P001 | Maize | plastid | 31.27 | 67.89 |
| GSMUA_Achr9P01520_001 | Banana | plastid | 60.86 | 65.92 |
| KRG94519 | Soybean | nucleus | 58.61 | 65.48 |
| GSMUA_Achr6P20740_001 | Banana | plastid | 62.36 | 64.41 |
| TraesCS2D01G280300.1 | Wheat | plastid | 60.86 | 62.02 |
| TraesCS2B01G298800.1 | Wheat | plastid | 60.86 | 61.9 |
| TraesCS2A01G281500.1 | Wheat | nucleus | 60.86 | 61.79 |
| KXG36804 | Sorghum | plastid | 60.49 | 60.71 |
| PGSC0003DMT400017831 | Potato | nucleus, plastid | 64.79 | 60.6 |
| Zm00001d022322_P001 | Maize | plastid | 60.3 | 60.53 |
| Zm00001d007039_P001 | Maize | plastid | 59.93 | 60.15 |
| KRH06950 | Soybean | plastid | 43.07 | 58.82 |
| HORVU2Hr1G068970.1 | Barley | cytosol | 56.37 | 58.11 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:12.4.2.2 | PDB:1V31 | EntrezGene:831267 | UniProt:A0A178UDN5 | ProteinID:AED91995.1 |
| ArrayExpress:AT5G14170 | EnsemblPlantsGene:AT5G14170 | RefSeq:AT5G14170 | TAIR:AT5G14170 | RefSeq:AT5G14170-TAIR-G | EnsemblPlants:AT5G14170.1 |
| TAIR:AT5G14170.1 | EMBL:AY065106 | Unigene:At.6512 | ProteinID:BAB08296.1 | EMBL:BT008892 | Symbol:CHC1 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 |
| GO:GO:0010224 | GO:GO:0010468 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0048364 | GO:GO:2000024 |
| InterPro:IPR036885 | RefSeq:NP_196921.1 | ProteinID:OAO91986.1 | PFAM:PF02201 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF22 | UniProt:Q9FMT4 | SMART:SM00151 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain |
| InterPro:SWIB_domain | UniParc:UPI00000A3B00 | SEG:seg | : | : | : |
Description
CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
Coordinates
chr5:-:4568480..4570994
Molecular Weight (calculated)
59273.9 Da
IEP (calculated)
10.092
GRAVY (calculated)
-0.521
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.