Factsheet for PGSC0003DMT400039420

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111250.2.1	Tomato	nucleus	94.11	94.11
VIT_17s0000g01500.t01	Wine grape	cytosol	49.81	65.66
Os04t0382100-01	Rice	nucleus	39.54	60.12
Zm00001d045433_P001	Maize	plastid	26.81	57.32
GSMUA_Achr9P01520_001	Banana	plastid	52.28	55.78
GSMUA_Achr6P20740_001	Banana	plastid	53.99	54.93
KRH57226	Soybean	nucleus	49.43	50.68
TraesCS2B01G298800.1	Wheat	plastid	50.57	50.67
TraesCS2D01G280300.1	Wheat	plastid	50.38	50.57
TraesCS2A01G281500.1	Wheat	nucleus	50.57	50.57
KXG36804	Sorghum	plastid	50.95	50.38
Zm00001d007039_P001	Maize	plastid	50.19	49.62
Zm00001d022322_P001	Maize	plastid	49.81	49.25
KRH03955	Soybean	nucleus	49.05	49.14
HORVU2Hr1G068970.1	Barley	cytosol	46.96	47.68
KRH54192	Soybean	plastid	48.1	47.47
PGSC0003DMT400017831	Potato	nucleus, plastid	50.76	46.76
KRH63759	Soybean	plastid	46.01	45.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400039420	EnsemblPlantsGene:PGSC0003DMG403015244	EntrezGene:102587176	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF22	PFAM:PF02201	PGSC:PGSC0003DMG403015244	RefSeq:XP_006351478.1	RefSeq:XP_015165991.1	SEG:seg
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0002948155	UniProt:M1B898	MapMan:12.4.2.2	:

Description

Brg-1 associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG403015244]

Coordinates

chr3:+:50839847..50843465

Molecular Weight (calculated)

58727.6 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.542

Length

526 amino acids

Sequence
(BLAST)

001: MNNNNPVKNV SLGTSVPMQI PQSMPIYHNQ PAARHFSQSP AQRGSHFPGH FQLSESRSHA PFQGQAQAFS HFITSGVNTN AGVSSPAAST PNTASGGARK
101: VLHRPPSRTG GSSNHGQATA SPLKTMELTP AVRRKKRKVS DRFIPDKVAA SLPESALYSQ LLEIEGRVDA VLSRKKIDML ESLKSPPRFQ KTLRIYVFNT
201: FANQTPANPD SDSDEPASWS LKIIGRILGG GPGPLASEKE QKFSVACPKF SSFFKKVTVY LDQSLYPDNH VILWDSSRSP ALHEGFEIKR KGDKELTAII
301: RLEMNYMPEK FKLSPALQEV LGIEVETRAR VLAALWYYIK TKKLQISHDT SSFTCDPSLR KIFGDEKLKF SLIPQKINPH LTAPQPIHLE HRIKLSGSNP
401: AGNTCYDVLV DVPFTLQKEL STFLSDLEKN KDIDAYDETI STAIKKIHEH QRRRAFFLGF SQSPTDFVNA LVASQARDLK LVSDDSTRDS EMERRSEFYN
501: QTWTEDAVVR YLNRNHASGA DHSARK

Best Arabidopsis Sequence Match ( AT5G14170.1 )
(BLAST)

001: MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT
101: TPGSLNMKRF QQKPPMRPPG APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL TRKKVDIQEA LKNPPCIQKT
201: LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG
301: NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK
401: IKLSGNNPAV SACYDVLVDV PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI ESQSKDLKVV AGEASRNAER
501: ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

Arabidopsis Description

CHC1SWI/SNF complex component SNF12 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMT4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.