Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03772 | Sorghum | nucleus, plastid | 90.2 | 90.2 |
| Zm00001d043164_P002 | Maize | nucleus | 87.53 | 81.2 |
| KXG24389 | Sorghum | nucleus | 40.31 | 71.83 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 66.37 | 65.78 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 65.92 | 65.05 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 66.59 | 64.86 |
| TraesCSU01G217300.1 | Wheat | cytosol | 30.96 | 64.35 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 65.92 | 64.35 |
| Zm00001d019469_P001 | Maize | extracellular | 17.82 | 55.94 |
| Zm00001d010656_P001 | Maize | nucleus | 54.79 | 55.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.08 | 54.36 |
| PGSC0003DMT400058457 | Potato | nucleus | 50.11 | 53.83 |
| Solyc01g009040.2.1 | Tomato | nucleus | 51.67 | 53.33 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 53.01 | 52.54 |
| PGSC0003DMT400018480 | Potato | nucleus | 49.0 | 51.76 |
| Solyc10g078330.1.1 | Tomato | nucleus | 48.55 | 51.54 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 47.88 | 51.44 |
| Bra028741.1-P | Field mustard | nucleus | 47.22 | 51.08 |
| CDY69551 | Canola | nucleus | 40.09 | 50.7 |
| Bra002046.1-P | Field mustard | nucleus | 44.32 | 50.64 |
| KRG95055 | Soybean | nucleus | 51.22 | 50.55 |
| Solyc10g080950.1.1 | Tomato | nucleus | 51.89 | 50.43 |
| PGSC0003DMT400015245 | Potato | nucleus | 49.0 | 50.11 |
| PGSC0003DMT400072211 | Potato | nucleus | 51.67 | 50.0 |
| CDY62475 | Canola | nucleus | 38.98 | 49.86 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 22.05 | 49.75 |
| AT2G26760.1 | Thale cress | nucleus | 42.54 | 49.35 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 50.78 | 49.35 |
| AT3G11520.1 | Thale cress | nucleus | 45.43 | 49.28 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 45.43 | 49.28 |
| KRH66715 | Soybean | nucleus | 42.98 | 49.23 |
| KRH66713 | Soybean | nucleus | 49.67 | 49.12 |
| KRH14611 | Soybean | nucleus | 47.66 | 48.75 |
| Solyc06g073610.2.1 | Tomato | nucleus | 47.66 | 48.64 |
| CDY11354 | Canola | plastid | 46.55 | 48.27 |
| KRH73516 | Soybean | nucleus | 46.77 | 47.73 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 34.97 | 47.72 |
| CDX80988 | Canola | plastid | 45.43 | 47.66 |
| AT5G06150.1 | Thale cress | nucleus | 46.55 | 46.97 |
| AT4G37490.1 | Thale cress | nucleus | 43.65 | 45.79 |
| CDX69311 | Canola | nucleus | 42.32 | 45.35 |
| Bra011769.1-P | Field mustard | nucleus | 42.76 | 44.86 |
| CDX75659 | Canola | nucleus | 42.76 | 44.86 |
| KRH66718 | Soybean | plastid | 37.19 | 44.77 |
| KRG95056 | Soybean | cytosol | 36.3 | 42.12 |
| Zm00001d008221_P001 | Maize | nucleus | 41.87 | 39.25 |
| Zm00001d036360_P002 | Maize | nucleus | 33.41 | 35.38 |
| Zm00001d026129_P001 | Maize | nucleus | 32.74 | 34.51 |
| Zm00001d020033_P001 | Maize | nucleus | 41.43 | 34.19 |
| Zm00001d002662_P010 | Maize | nucleus | 34.52 | 34.07 |
| Zm00001d020996_P001 | Maize | nucleus | 40.31 | 33.27 |
| Zm00001d033365_P002 | Maize | nucleus | 26.73 | 32.26 |
| CDY14091 | Canola | plastid | 46.33 | 31.71 |
| Zm00001d013744_P001 | Maize | nucleus | 23.83 | 29.97 |
| CDY04980 | Canola | nucleus | 46.99 | 29.39 |
| Zm00001d032128_P001 | Maize | cytosol | 10.24 | 29.11 |
| AT1G34460.5 | Thale cress | cytosol | 30.96 | 27.91 |
| Zm00001d030849_P001 | Maize | nucleus | 25.17 | 26.71 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 24.94 | 25.63 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 28.51 | 24.57 |
| Zm00001d040381_P001 | Maize | plastid | 28.51 | 24.02 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 24.5 | 22.68 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 10.02 | 22.5 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 24.94 | 21.96 |
| Zm00001d010404_P001 | Maize | nucleus | 22.49 | 20.82 |
| Zm00001d048127_P001 | Maize | plastid | 20.27 | 19.0 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100274285 | MapMan:13.1.1.1.2 | ProteinID:AQK99872.1 | UniProt:B4FZZ7 | EMBL:BT042685 |
| EMBL:BT069324 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF343 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00000343E8 |
| EnsemblPlantsGene:Zm00001d012560 | EnsemblPlants:Zm00001d012560_P002 | EnsemblPlants:Zm00001d012560_T002 | SEG:seg | : | : |
Description
cyclin7 cyclin4
Coordinates
chr8:+:176648813..176651657
Molecular Weight (calculated)
50043.5 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.198
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTRNHNAAA AAAPQHHHHN RGGAPALGKS KAVPGRADAM NRRAPLGDIG NLVSVRPAEG KPQLQEQINR PITRSFGAQL VKNVQANAAI KNAAILPARH
101: APRQERKAPA KQPPPEDVIV LSSDSEQSRT QLESSASSVR SRKKVINTLS SVLSARSKAA CGITDKRRQV AVIEDIDKLD VNNELAVVEY IEDIYTFYKI
201: AQHDRRPCDY IDTQVEINPK MRAILAGWII EVHHKFELMP ETLYLTMYII DQYLSLQPVL RRELQLVGVS AMLIACKYEE IWAPEVNDFI LISDSAYSRE
301: QILSMEKGIL NSLEWNLTVP TVYMFLVRFL KAAALGNKVE KEMENMVFFF AELALMQYGL VTRLPSLVAA SVVYAARLTL KRAPLWTDTL KHHTGFRESE
401: TELIECTKLL VSAHSSAADS KLRSVYKKYS SEQFGGVALR PPAAAVEIK
101: APRQERKAPA KQPPPEDVIV LSSDSEQSRT QLESSASSVR SRKKVINTLS SVLSARSKAA CGITDKRRQV AVIEDIDKLD VNNELAVVEY IEDIYTFYKI
201: AQHDRRPCDY IDTQVEINPK MRAILAGWII EVHHKFELMP ETLYLTMYII DQYLSLQPVL RRELQLVGVS AMLIACKYEE IWAPEVNDFI LISDSAYSRE
301: QILSMEKGIL NSLEWNLTVP TVYMFLVRFL KAAALGNKVE KEMENMVFFF AELALMQYGL VTRLPSLVAA SVVYAARLTL KRAPLWTDTL KHHTGFRESE
401: TELIECTKLL VSAHSSAADS KLRSVYKKYS SEQFGGVALR PPAAAVEIK
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.