Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G06150.1 | Thale cress | nucleus | 56.63 | 63.37 |
| Bra028741.1-P | Field mustard | nucleus | 47.79 | 57.35 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 47.59 | 57.25 |
| CDX80988 | Canola | plastid | 48.8 | 56.78 |
| CDY11354 | Canola | plastid | 49.2 | 56.58 |
| AT3G11520.1 | Thale cress | nucleus | 39.36 | 47.34 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 36.35 | 39.96 |
| KRG95055 | Soybean | nucleus | 35.14 | 38.46 |
| KRH66713 | Soybean | nucleus | 34.94 | 38.33 |
| Zm00001d019469_P001 | Maize | extracellular | 10.84 | 37.76 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 34.74 | 37.45 |
| CDY14091 | Canola | plastid | 49.2 | 37.35 |
| KRH66715 | Soybean | nucleus | 28.51 | 36.22 |
| TraesCSU01G217300.1 | Wheat | cytosol | 15.66 | 36.11 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 30.72 | 36.0 |
| AT4G37490.1 | Thale cress | nucleus | 30.92 | 35.98 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 31.33 | 35.86 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 14.06 | 35.18 |
| KRH66718 | Soybean | plastid | 26.31 | 35.12 |
| GSMUA_Achr10P... | Banana | nucleus | 31.73 | 34.88 |
| Solyc10g080950.1.1 | Tomato | nucleus | 32.33 | 34.85 |
| Solyc10g078330.1.1 | Tomato | nucleus | 29.32 | 34.52 |
| PGSC0003DMT400072211 | Potato | nucleus | 32.13 | 34.48 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 31.33 | 34.14 |
| PGSC0003DMT400018480 | Potato | nucleus | 29.12 | 34.12 |
| CDY04980 | Canola | nucleus | 47.79 | 33.15 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 28.92 | 33.03 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 28.92 | 33.03 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 27.71 | 32.86 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 28.51 | 32.57 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 28.51 | 32.49 |
| AT2G26760.1 | Thale cress | nucleus | 25.1 | 32.3 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 28.31 | 32.19 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 27.91 | 31.88 |
| EES03772 | Sorghum | nucleus, plastid | 28.71 | 31.85 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 28.71 | 31.57 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 28.71 | 31.43 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 27.91 | 31.38 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 27.91 | 31.38 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 25.3 | 31.34 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 28.92 | 31.3 |
| KRG95056 | Soybean | cytosol | 24.3 | 31.27 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 28.92 | 31.24 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 27.91 | 30.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.47 | 30.87 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 19.68 | 30.62 |
| Os01t0281200-01 | Rice | nucleus | 25.9 | 30.5 |
| Zm00001d043164_P002 | Maize | nucleus | 28.71 | 29.55 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 19.48 | 29.48 |
| HORVU1Hr1G068080.1 | Barley | plastid | 19.88 | 28.95 |
| Zm00001d010656_P001 | Maize | nucleus | 25.7 | 28.7 |
| EES18429 | Sorghum | mitochondrion | 26.51 | 28.7 |
| KXG24389 | Sorghum | nucleus | 14.46 | 28.57 |
| TraesCS3D01G195200.1 | Wheat | plastid | 23.49 | 28.33 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 23.29 | 28.02 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 21.89 | 27.53 |
| Os05t0493500-00 | Rice | nucleus | 26.51 | 27.1 |
| EES02793 | Sorghum | nucleus | 24.9 | 26.78 |
| Zm00001d008221_P001 | Maize | nucleus | 25.5 | 26.51 |
| AT1G20610.1 | Thale cress | nucleus | 22.69 | 26.34 |
| AT4G35620.1 | Thale cress | nucleus | 22.29 | 25.87 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 25.3 | 25.61 |
| AT2G17620.1 | Thale cress | nucleus | 21.29 | 24.71 |
| AT1G76310.3 | Thale cress | nucleus | 22.09 | 23.97 |
| Zm00001d020033_P001 | Maize | nucleus | 24.1 | 22.06 |
| Zm00001d020996_P001 | Maize | nucleus | 24.1 | 22.06 |
| AT1G47220.1 | Thale cress | nucleus | 14.46 | 22.02 |
| AT1G47210.2 | Thale cress | nucleus | 16.27 | 21.77 |
| AT5G43080.1 | Thale cress | nucleus | 15.46 | 21.69 |
| AT1G77390.1 | Thale cress | plastid | 16.87 | 19.0 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 14.06 | 18.92 |
| AT1G44110.1 | Thale cress | plastid | 17.47 | 18.91 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 9.64 | 18.11 |
| AT5G11300.1 | Thale cress | plastid | 15.26 | 17.43 |
| AT5G25380.4 | Thale cress | plastid | 15.46 | 17.38 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 15.26 | 16.89 |
| AT1G80370.1 | Thale cress | plastid | 15.46 | 16.7 |
| AT1G16330.1 | Thale cress | nucleus | 18.67 | 14.35 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | EntrezGene:840348 | UniProt:A0A1P8AM20 | ProteinID:ANM57699.1 | ArrayExpress:AT1G34460 |
| EnsemblPlantsGene:AT1G34460 | RefSeq:AT1G34460 | TAIR:AT1G34460 | RefSeq:AT1G34460-TAIR-G | EnsemblPlants:AT1G34460.5 | Symbol:CYCB1;5 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | RefSeq:NP_001320187.1 | PFAM:PF00134 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF267 | SUPFAM:SSF47954 | UniParc:UPI000849317F | : | : |
Description
CYCB1;5CYCLIN B1;5 [Source:TAIR;Acc:AT1G34460]
Coordinates
chr1:+:12595110..12600413
Molecular Weight (calculated)
56388.5 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.319
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHYINIYGK RLFDIGLYLK TSVDLILQQQ HVLMSQQKFT DISLCHREAP NPKLDLPDDN RLSPLTELED IGQQSKTLGT AIHRKISEQK RVIESGSVAS
101: IVEHKRTNLS AIMATRANIP EQVRGAPLVD GLKIQNKNGA VKNRRALGDI GNLVSVPGVQ GGKAQPPINR PITLSFRAQL LANAQLERKP INGDNKVPAL
201: GPKSQPLAAR NPEAQRAVQK KNLVVKQQTK PVEVIETKRN AQSKAACGIV NKPKILDIDE SDKDNHVAAV EYVDDMYSFY KEVEKESQPK MYMHIQTEMN
301: EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLYVKA VPKRELQVND LVYVTDNAYS SRQILVMKKA ILGNLEWYLT IPTQYVFLFC FIKASISDPE
401: VLHVQKKNLQ ASKTKSFSIQ VLSFSSHKSI VKSDQFCKKF NLCQEVTALA SEFHLGNCEA WRETVTKLKD PETKVKVVEK ILFWSPGCYE IWLPGEST
101: IVEHKRTNLS AIMATRANIP EQVRGAPLVD GLKIQNKNGA VKNRRALGDI GNLVSVPGVQ GGKAQPPINR PITLSFRAQL LANAQLERKP INGDNKVPAL
201: GPKSQPLAAR NPEAQRAVQK KNLVVKQQTK PVEVIETKRN AQSKAACGIV NKPKILDIDE SDKDNHVAAV EYVDDMYSFY KEVEKESQPK MYMHIQTEMN
301: EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLYVKA VPKRELQVND LVYVTDNAYS SRQILVMKKA ILGNLEWYLT IPTQYVFLFC FIKASISDPE
401: VLHVQKKNLQ ASKTKSFSIQ VLSFSSHKSI VKSDQFCKKF NLCQEVTALA SEFHLGNCEA WRETVTKLKD PETKVKVVEK ILFWSPGCYE IWLPGEST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.