Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G195200.1 | Wheat | plastid | 78.05 | 92.98 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 76.63 | 91.06 |
| Os01t0281200-01 | Rice | nucleus | 59.15 | 68.79 |
| Zm00001d019469_P001 | Maize | extracellular | 19.72 | 67.83 |
| EES02793 | Sorghum | nucleus | 54.27 | 57.67 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 45.94 | 57.07 |
| Zm00001d008221_P001 | Maize | nucleus | 53.05 | 54.49 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 31.91 | 49.06 |
| HORVU1Hr1G068080.1 | Barley | plastid | 32.72 | 47.08 |
| Zm00001d020033_P001 | Maize | nucleus | 51.83 | 46.88 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 18.9 | 46.73 |
| Zm00001d020996_P001 | Maize | nucleus | 50.81 | 45.96 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 37.4 | 44.02 |
| PGSC0003DMT400018480 | Potato | nucleus | 36.99 | 42.82 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 39.23 | 42.6 |
| Bra002046.1-P | Field mustard | nucleus | 33.94 | 42.49 |
| Solyc10g078330.1.1 | Tomato | nucleus | 36.38 | 42.32 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 38.82 | 42.16 |
| PGSC0003DMT400015245 | Potato | nucleus | 37.6 | 42.14 |
| AT2G26760.1 | Thale cress | nucleus | 33.13 | 42.12 |
| AT3G11520.1 | Thale cress | nucleus | 35.37 | 42.03 |
| PGSC0003DMT400058457 | Potato | nucleus | 35.57 | 41.87 |
| CDY62475 | Canola | nucleus | 29.67 | 41.6 |
| KRH66715 | Soybean | nucleus | 32.93 | 41.33 |
| CDY69551 | Canola | nucleus | 29.67 | 41.13 |
| Solyc06g073610.2.1 | Tomato | nucleus | 36.59 | 40.91 |
| Solyc01g009040.2.1 | Tomato | nucleus | 35.98 | 40.69 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 36.59 | 40.63 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 36.59 | 40.63 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 34.55 | 40.48 |
| KRH14611 | Soybean | nucleus | 35.98 | 40.32 |
| Bra028741.1-P | Field mustard | nucleus | 33.94 | 40.24 |
| KRG95055 | Soybean | nucleus | 37.2 | 40.22 |
| CDX69311 | Canola | nucleus | 34.15 | 40.1 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 37.6 | 40.04 |
| KRH73516 | Soybean | nucleus | 35.37 | 39.55 |
| Bra011769.1-P | Field mustard | nucleus | 34.35 | 39.49 |
| CDX75659 | Canola | nucleus | 34.35 | 39.49 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 34.96 | 39.27 |
| Solyc10g080950.1.1 | Tomato | nucleus | 36.79 | 39.18 |
| KRH66718 | Soybean | plastid | 29.67 | 39.14 |
| AT4G37490.1 | Thale cress | nucleus | 33.94 | 39.02 |
| PGSC0003DMT400072211 | Potato | nucleus | 36.79 | 39.01 |
| KRH66713 | Soybean | nucleus | 35.98 | 38.99 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 32.32 | 38.41 |
| CDY11354 | Canola | plastid | 33.33 | 37.88 |
| AT5G06150.1 | Thale cress | nucleus | 33.94 | 37.53 |
| CDX80988 | Canola | plastid | 32.52 | 37.38 |
| KRG95056 | Soybean | cytosol | 28.25 | 35.92 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 29.27 | 34.29 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 18.9 | 33.45 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 30.49 | 31.85 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 22.76 | 30.03 |
| CDY14091 | Canola | plastid | 34.35 | 25.76 |
| AT1G34460.5 | Thale cress | cytosol | 25.61 | 25.3 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 22.97 | 24.89 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 25.2 | 24.46 |
| CDY04980 | Canola | nucleus | 33.74 | 23.12 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 19.31 | 22.89 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | UniProt:A0A287KV57 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU3Hr1G040990 | EnsemblPlants:HORVU3Hr1G040990.2 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF211 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B46F8D7 | SEG:seg |
Description
No Description!
Coordinates
chrchr3H:+:254456729..254460078
Molecular Weight (calculated)
54926.0 Da
IEP (calculated)
9.915
GRAVY (calculated)
-0.367
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: ALSHRRFPTN KKKSTVGEPS KNSPYRANRP AAGPPSVSSS VPSPPQRHNH KERLAVVEIK NREWREQRAT RISESSGNAA MASSRQAAAA ASDALAQEHK
101: GDARLVRRAK AAAGEQQAAR SRPALIDLSN RMSGRAALVV PNRHKTVPVA AVDNCRKAIK KQENNRVKHE VIVISSDSEN EKKNPGKRAS SWRAPPLTAI
201: LTKCSRESDG VISSTKKVSA TYNIDKADAH NELAVVEYVE DIYRFYKSTE GSSRPLCTYM SSQTDINERM RAILIDWLIE VHHRLMLMPE TLYLTVYIID
301: QYLSMEYVLR KELQLVGVSA MLISCKYEEI WAPLVKELLG LSYNAFSREQ VLSTEKSILN KLQWNLTVPT VYMFLLRYAK AAMGDKELEN MAFFYAELAL
401: VEYSMLVYSP SVTAAAAVYT ARCTLNMSPI WSDILEHHTG LGESQLMECA KRLACLHSTA AGSSKQKVVY NKYADPKLGA VSLYSPSKRQ II
101: GDARLVRRAK AAAGEQQAAR SRPALIDLSN RMSGRAALVV PNRHKTVPVA AVDNCRKAIK KQENNRVKHE VIVISSDSEN EKKNPGKRAS SWRAPPLTAI
201: LTKCSRESDG VISSTKKVSA TYNIDKADAH NELAVVEYVE DIYRFYKSTE GSSRPLCTYM SSQTDINERM RAILIDWLIE VHHRLMLMPE TLYLTVYIID
301: QYLSMEYVLR KELQLVGVSA MLISCKYEEI WAPLVKELLG LSYNAFSREQ VLSTEKSILN KLQWNLTVPT VYMFLLRYAK AAMGDKELEN MAFFYAELAL
401: VEYSMLVYSP SVTAAAAVYT ARCTLNMSPI WSDILEHHTG LGESQLMECA KRLACLHSTA AGSSKQKVVY NKYADPKLGA VSLYSPSKRQ II
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.