Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G194500.1 | Wheat | cytosol | 49.84 | 95.03 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 46.91 | 89.44 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 46.91 | 89.44 |
| Zm00001d030098_P001 | Maize | plastid | 71.66 | 71.43 |
| EER91871 | Sorghum | plastid | 71.99 | 69.28 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 60.26 | 53.16 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 44.3 | 47.55 |
| KRH45443 | Soybean | nucleus | 43.32 | 45.55 |
| KRH75619 | Soybean | nucleus | 42.35 | 44.98 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 45.93 | 44.9 |
| KRH74422 | Soybean | nucleus | 45.6 | 44.03 |
| KRH45449 | Soybean | nucleus | 42.35 | 43.48 |
| Bra024996.1-P | Field mustard | nucleus | 32.25 | 43.42 |
| CDY58504 | Canola | nucleus | 31.92 | 42.98 |
| CDX77690 | Canola | nucleus | 31.92 | 42.61 |
| PGSC0003DMT400005396 | Potato | nucleus | 45.93 | 40.87 |
| CDY37148 | Canola | cytosol | 29.97 | 40.71 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 30.62 | 40.17 |
| AT5G46780.1 | Thale cress | nucleus | 30.29 | 39.24 |
| Bra022063.1-P | Field mustard | cytosol | 29.32 | 39.13 |
| CDX79596 | Canola | nucleus | 35.83 | 36.79 |
| Solyc06g061190.1.1 | Tomato | nucleus | 43.97 | 36.68 |
| PGSC0003DMT400092612 | Potato | nucleus | 43.97 | 36.39 |
| KRH45444 | Soybean | nucleus | 42.35 | 36.01 |
| CDX84225 | Canola | nucleus | 39.09 | 34.88 |
| Bra017329.1-P | Field mustard | nucleus | 38.11 | 34.21 |
| CDY31674 | Canola | nucleus | 38.76 | 33.71 |
| AT1G32610.1 | Thale cress | nucleus | 31.6 | 33.33 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 30.29 | 31.74 |
| AT2G35230.1 | Thale cress | nucleus | 41.04 | 31.34 |
| Bra005358.1-P | Field mustard | nucleus | 38.44 | 29.95 |
| CDX84616 | Canola | nucleus | 35.83 | 27.03 |
| Bra023004.1-P | Field mustard | nucleus | 36.16 | 25.4 |
| HORVU4Hr1G078500.2 | Barley | plastid | 23.45 | 23.76 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G050850.1 | EnsemblPlantsGene:HORVU1Hr1G050850 | InterPro:VQ | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | PFAM:PF05678 |
| SEG:seg | UniParc:UPI000B472D7E | UniProt:A0A287FIS5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:-:377082048..377090717
Molecular Weight (calculated)
32502.9 Da
IEP (calculated)
12.226
GRAVY (calculated)
-0.683
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSSSGSNS GGGHNAHLGV NKLGRNIRKA TPPPPPQQQG QPPRPPHPQP QVYNISKNQF RDIVQQLTAG TPSPPPPQHH APRPPPPLQQ QHQQQQHSKP
101: ASMRLQKIRP PPISTPVARP PPVHNHHQIP NPNHNPAFHR PPPPHHMPMP PSGPAWADSP VSAYMRILEN SLFSATPPGA AAAAAAAAHA HAAAAAAAAG
201: RGPPQHPYHP PPPPVPSPGI LPSPTGFLNL LSPTPRSPYP LLSPGFQQPP PLTPNFPMLS PLPGTGILGP GPMPAPPSPG LWFPQSPSGL LSPSGFFPLL
301: SPRWRDM
101: ASMRLQKIRP PPISTPVARP PPVHNHHQIP NPNHNPAFHR PPPPHHMPMP PSGPAWADSP VSAYMRILEN SLFSATPPGA AAAAAAAAHA HAAAAAAAAG
201: RGPPQHPYHP PPPPVPSPGI LPSPTGFLNL LSPTPRSPYP LLSPGFQQPP PLTPNFPMLS PLPGTGILGP GPMPAPPSPG LWFPQSPSGL LSPSGFFPLL
301: SPRWRDM
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.