CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45443	Soybean	nucleus	93.98	96.23
KRH75619	Soybean	nucleus	78.26	80.97
KRH45444	Soybean	nucleus	93.65	77.56
KRH74422	Soybean	nucleus	64.55	60.69
VIT_02s0012g01280.t01	Wine grape	nucleus	48.83	51.05
PGSC0003DMT400005396	Potato	nucleus	54.52	47.25
TraesCS1D01G198200.1	Wheat	cytosol	25.08	46.58
TraesCS1B01G209400.1	Wheat	cytosol	25.08	46.58
CDX79596	Canola	nucleus	45.15	45.15
TraesCS1A01G194500.1	Wheat	cytosol	24.08	44.72
PGSC0003DMT400092612	Potato	nucleus	55.18	44.47
Solyc06g061190.1.1	Tomato	nucleus	53.51	43.48
CDX84225	Canola	nucleus	48.83	42.44
HORVU1Hr1G050850.1	Barley	plastid	43.48	42.35
Zm00001d030098_P001	Maize	plastid	43.48	42.21
CDY31674	Canola	nucleus	49.16	41.64
EER91871	Sorghum	plastid	44.15	41.38
Bra017329.1-P	Field mustard	nucleus	47.16	41.23
GSMUA_Achr5P03460_001	Banana	nucleus	40.8	38.85
KRH16774	Soybean	plastid	15.05	37.82
AT1G32610.1	Thale cress	nucleus	36.45	37.46
Bra005358.1-P	Field mustard	nucleus	48.83	37.06
AT2G35230.1	Thale cress	nucleus	49.5	36.82
KRH72387	Soybean	nucleus	25.08	35.38
GSMUA_Achr4P27300_001	Banana	cytosol	27.42	35.04
CDX84616	Canola	nucleus	46.49	34.15
KRH62312	Soybean	nucleus	31.44	32.75
Bra023004.1-P	Field mustard	nucleus	46.82	32.04
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	36.79	31.61
KRH53024	Soybean	plastid	31.1	31.53

Protein Annotations

EMBL:ACUP02005227	EnsemblPlants:KRH45449	EnsemblPlantsGene:GLYMA_08G272200	EntrezGene:100786224	InterPro:VQ	PANTHER:PTHR33783
PANTHER:PTHR33783:SF2	PFAM:PF05678	ProteinID:KRH45449	ProteinID:KRH45449.1	SEG:seg	UniParc:UPI0006EDF925
UniProt:A0A0R0IYB1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:35664570..35666331

Molecular Weight (calculated)

32845.9 Da

IEP (calculated)

10.752

GRAVY (calculated)

-0.798

Length

299 amino acids

Sequence
(BLAST)

001: MDESKNRHND NLGVNKMGKN IRKSPLHQPN YGNNNNSSMN GGRQQQQQPQ PQVYNISKND FRDIVQQLTG SPSQSQDHPQ SKPPQNQNNS PKPQSMRLQK
101: IRPPPLPYVR PPLHTTLPAA RPAHFRQQPS PNPNNIAESP ISAYMRYLEH SITDPTSRGA QFQPHHHPAS SALLPNPPML PLNATNPLPP PPAIAAVPSP
201: QPNGPPILPL PSPTSQFLLP SPNGYMSFLS PQYGYPPLLS PGFQFPSPFS PNFPFSPFAQ SGILGPGPQP PLSPGLFPLS PSGFFPITSP RSFVHWHVK

Best Arabidopsis Sequence Match ( AT2G35230.1 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.