CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45443	Soybean	nucleus	78.39	96.92
KRH45449	Soybean	nucleus	77.56	93.65
KRH75619	Soybean	nucleus	63.43	79.24
KRH74422	Soybean	nucleus	53.46	60.69
VIT_02s0012g01280.t01	Wine grape	nucleus	41.0	51.75
PGSC0003DMT400005396	Potato	nucleus	45.15	47.25
TraesCS1D01G198200.1	Wheat	cytosol	20.78	46.58
TraesCS1B01G209400.1	Wheat	cytosol	20.78	46.58
CDX79596	Canola	nucleus	37.95	45.82
TraesCS1A01G194500.1	Wheat	cytosol	19.94	44.72
PGSC0003DMT400092612	Potato	nucleus	44.88	43.67
Solyc06g061190.1.1	Tomato	nucleus	44.32	43.48
Zm00001d030098_P001	Maize	plastid	36.29	42.53
HORVU1Hr1G050850.1	Barley	plastid	36.01	42.35
CDX84225	Canola	nucleus	40.17	42.15
CDY31674	Canola	nucleus	40.44	41.36
EER91871	Sorghum	plastid	36.29	41.07
Bra017329.1-P	Field mustard	nucleus	38.5	40.64
GSMUA_Achr5P03460_001	Banana	nucleus	34.07	39.17
KRH16774	Soybean	plastid	12.74	38.66
AT1G32610.1	Thale cress	nucleus	30.19	37.46
AT2G35230.1	Thale cress	nucleus	41.27	37.06
Bra005358.1-P	Field mustard	nucleus	40.17	36.8
KRH72387	Soybean	nucleus	21.05	35.85
CDX84616	Canola	nucleus	39.06	34.64
GSMUA_Achr4P27300_001	Banana	cytosol	22.44	34.62
KRH62312	Soybean	nucleus	26.32	33.1
Bra023004.1-P	Field mustard	nucleus	39.34	32.49
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	30.75	31.9
KRH53024	Soybean	plastid	25.76	31.53

Protein Annotations

EMBL:ACUP02005227	EnsemblPlants:KRH45444	EnsemblPlantsGene:GLYMA_08G272100	EntrezGene:100817760	InterPro:VQ	PANTHER:PTHR33783
PANTHER:PTHR33783:SF2	PFAM:PF05678	ProteinID:KRH45444	ProteinID:KRH45444.1	SEG:seg	UniParc:UPI0006ED9210
UniProt:A0A0R0J1G9	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:35631805..35637288

Molecular Weight (calculated)

39879.2 Da

IEP (calculated)

10.320

GRAVY (calculated)

-0.904

Length

361 amino acids

Sequence
(BLAST)

001: MDESKNRHND NLGVNKMGKN IRKSPLHQPN YGNNNNSSMN GGRQQQQQPQ PQPQVYNISK NDFRDIVQQL TGSPSQSQDH PQSKPPQNQN NSPKPQSMRL
101: QKIRPPPLPY VRPPLHTTLP AARPAHFRQQ PSPNPNNIAE SPISAYMRYL EHSITDPTSR GAQFQPHHHP ASSALLPNPP MLPLNATNPL PPPPAIAAVP
201: SPQPNGPPIL PLPSPTSQFL LPSPNDYMNF LSPQSCYRPL LSPGIQFPSP FTPHFPLSPF AQSGILGPGP QPPLSPGLFP LSPSGFFPMT SPSVGPHQGL
301: SCKPYNVPKQ ELLLSSSSLF SSSHPRCHKG IFEEKGKEEL QNSTRHDKQS HHHNEKRIEI K

Best Arabidopsis Sequence Match ( AT2G35230.1 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.