Factsheet for Solyc06g061190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005396	Potato	nucleus	83.7	89.28
KRH74422	Soybean	nucleus	55.43	64.15
VIT_02s0012g01280.t01	Wine grape	nucleus	44.57	57.34
KRH75619	Soybean	nucleus	44.02	56.06
KRH45443	Soybean	nucleus	44.29	55.82
KRH45449	Soybean	nucleus	43.48	53.51
TraesCS1D01G198200.1	Wheat	cytosol	21.74	49.69
TraesCS1B01G209400.1	Wheat	cytosol	21.74	49.69
CDX79596	Canola	nucleus	40.22	49.5
CDX84225	Canola	nucleus	45.92	49.13
TraesCS1A01G194500.1	Wheat	cytosol	21.2	48.45
Bra017329.1-P	Field mustard	nucleus	44.02	47.37
CDY31674	Canola	nucleus	44.57	46.46
EER91871	Sorghum	plastid	39.4	45.45
Zm00001d030098_P001	Maize	plastid	37.5	44.81
KRH45444	Soybean	nucleus	43.48	44.32
HORVU1Hr1G050850.1	Barley	plastid	36.68	43.97
AT1G32610.1	Thale cress	nucleus	34.51	43.64
AT2G35230.1	Thale cress	nucleus	45.65	41.79
Bra005358.1-P	Field mustard	nucleus	44.57	41.62
GSMUA_Achr5P03460_001	Banana	nucleus	35.05	41.08
GSMUA_Achr4P27300_001	Banana	cytosol	25.0	39.32
CDX84616	Canola	nucleus	41.58	37.59
Bra023004.1-P	Field mustard	nucleus	41.85	35.24
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	30.98	32.76
Solyc04g074520.1.1	Tomato	nucleus	28.26	32.2

Protein Annotations

EnsemblPlants:Solyc06g061190.1.1	EnsemblPlantsGene:Solyc06g061190.1	InterPro:VQ	PFAM:PF05678	SEG:seg	UniParc:UPI0002766581
UniProt:K4C6U9	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:-:39193327..39194433

Molecular Weight (calculated)

39831.9 Da

IEP (calculated)

11.868

GRAVY (calculated)

-0.751

Length

368 amino acids

Sequence
(BLAST)

001: MDNSNRSYNR NADHLGVNKF GKNINKSPIH QPNFNNANSA RQQPQPQVYN INKNDFRSVV QQLTGSPSQE PPSKPPQNPS KPPSMRLQKI RPPPLTPINR
101: PQIPMHPPAQ ILAPARPAGG VPYQNNIARP PPHYGQPSPP MLPPTPGDVW TNTTESPISV YMRYLQNSII DSGPKQTQFQ GPGHFQAHPA SSGLLPNPSM
201: PPFPSPRMNG PPPFPLSRMN GPPPPLLSPR MNGPPPLPFA RLNGPPPRLL SPRMNGPPLL PSPRMNGPPP PLPSPGINGP PPLPSPTSQY LLPSPTGFLN
301: LLSPRSPYPL LSPGMQHPPP LTPNFFFSPM AQPGGFGTGP QFPPSPGYGF PLSPSGFFAM SSPRWRGQ

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.