CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84225	Canola	nucleus	88.67	90.99
Bra005358.1-P	Field mustard	nucleus	97.73	87.56
CDX79596	Canola	nucleus	59.77	70.57
AT2G35230.1	Thale cress	nucleus	64.87	56.97
CDX84616	Canola	nucleus	64.31	55.77
KRH74422	Soybean	nucleus	47.88	53.14
KRH75619	Soybean	nucleus	42.78	52.25
KRH45443	Soybean	nucleus	42.21	51.03
VIT_02s0012g01280.t01	Wine grape	nucleus	41.08	50.7
KRH45449	Soybean	nucleus	41.64	49.16
PGSC0003DMT400005396	Potato	nucleus	45.61	46.67
Solyc06g061190.1.1	Tomato	nucleus	46.46	44.57
CDX77690	Canola	nucleus	28.9	44.35
CDY58504	Canola	nucleus	28.61	44.3
TraesCS1B01G209400.1	Wheat	cytosol	19.83	43.48
TraesCS1D01G198200.1	Wheat	cytosol	19.83	43.48
CDY37148	Canola	cytosol	27.48	42.92
TraesCS1A01G194500.1	Wheat	cytosol	19.55	42.86
PGSC0003DMT400092612	Potato	nucleus	45.04	42.86
EER91871	Sorghum	plastid	37.68	41.69
Zm00001d030098_P001	Maize	plastid	35.69	40.91
KRH45444	Soybean	nucleus	41.36	40.44
HORVU1Hr1G050850.1	Barley	plastid	33.71	38.76
GSMUA_Achr5P03460_001	Banana	nucleus	33.99	38.22
GSMUA_Achr4P27300_001	Banana	cytosol	23.8	35.9
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	27.48	33.11
CDY26860	Canola	nucleus, plastid	22.95	28.03
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	27.48	27.87
CDX87454	Canola	nucleus, plastid	20.11	27.63
CDX79256	Canola	nucleus, plastid	19.26	27.2
CDY14617	Canola	nucleus, plastid	22.38	27.05
CDX88437	Canola	nucleus, plastid	18.13	25.91

Protein Annotations

EnsemblPlants:CDY31674	EnsemblPlantsGene:GSBRNA2T00050285001	InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF2	PFAM:PF05678
ProteinID:CDY31674	ProteinID:CDY31674.1	SEG:seg	UniParc:UPI0004EF1612	UniProt:A0A078H2N4	MapMan:35.1

Description

BnaA05g08730DBnaA05g08730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2N4]

Coordinates

chrLK032277:+:247193..248873

Molecular Weight (calculated)

38315.3 Da

IEP (calculated)

10.800

GRAVY (calculated)

-0.940

Length

353 amino acids

Sequence
(BLAST)

001: MDGPRQNDHL GVNKIGKNIR KSPLHQPNFG ANANAARPQG QPQVYNISKT DFRSMVQQLT GSPARESLPR PPPQNSSPKP QSTRLQRIRP PPLTQINQPA
101: APVQHYPHGY ASGPPPQPRL LQGTQQHQQQ PMMGHGDQFW SNTAESPISG YMRYLQSSLG DAAPSGNQMQ PKHRPYMPAQ PQPYMAPQAQ TQPQAQPHMM
201: PGSQPHMNMQ GPLPPPGLVP SPAPRNLPSQ PQFNGPVPGT PTLPSPRFNQ MYGGFPSPRY NGFGPLNSPT SQFAPPSPSG YPNMFSPRSS YPLLSPGVQY
301: PQPLTPNFSF SQLSQSGNQG PGAGTGPPQP PPSPGLMYPL SPGFFPSPRW GNY

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.