CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008356.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY14617	Canola	nucleus, plastid	84.43	83.56
CDX79256	Canola	nucleus, plastid	60.55	70.0
AT1G78310.1	Thale cress	nucleus, plastid	67.47	62.7
CDX88437	Canola	nucleus, plastid	53.29	62.35
CDX87454	Canola	nucleus, plastid	55.02	61.87
KRH16774	Soybean	plastid	19.72	47.9
KRH53024	Soybean	plastid	48.44	47.46
KRH62312	Soybean	nucleus	47.06	47.39
PGSC0003DMT400097756	Potato	nucleus	50.52	45.48
KRH72387	Soybean	nucleus	32.18	43.87
Solyc04g074520.1.1	Tomato	nucleus	48.79	43.65
VIT_18s0001g06350.t01	Wine grape	nucleus	48.44	41.79
OQU93090	Sorghum	plastid	33.22	38.87
Os03t0190000-01	Rice	plastid	32.53	37.9
Zm00001d027998_P001	Maize	plastid	31.83	37.55
Zm00001d048224_P001	Maize	plastid	29.76	36.44
GSMUA_Achr8P18110_001	Banana	plastid	31.49	35.69
CDY58504	Canola	nucleus	26.99	34.21
CDX77690	Canola	nucleus	26.99	33.91
CDY37148	Canola	cytosol	24.91	31.86
HORVU4Hr1G078500.2	Barley	plastid	31.14	29.7
CDX79596	Canola	nucleus	25.95	25.08
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	24.91	24.57
CDX84225	Canola	nucleus	28.37	23.84
CDY31674	Canola	nucleus	28.03	22.95
CDX84616	Canola	nucleus	26.99	19.16

Protein Annotations

EnsemblPlants:CDY26860	EnsemblPlantsGene:GSBRNA2T00036529001	InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1	PFAM:PF05678
ProteinID:CDY26860	ProteinID:CDY26860.1	SEG:seg	UniParc:UPI00025464C4	UniProt:A0A078GJZ0	MapMan:35.1

Description

BnaA02g18850DBnaA02g18850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJZ0]

Coordinates

chrLK032195:-:255134..256003

Molecular Weight (calculated)

31194.7 Da

IEP (calculated)

10.956

GRAVY (calculated)

-0.757

Length

289 amino acids

Sequence
(BLAST)

001: MDKSCNSSRD SSAVSATATS STGNNNTGGN RDHHYLRQLN KLSHKISKPT VASSSSSVSA AVNQETSHQP LPPPPQQPPI NHGNLHQHQP PVYNISKSDF
101: RDVVQKLTGS PAHERISAPP PIHHPRPQQS SRLHRIRPPP LAHVINRPPG LLNDAHRNWS GGFVPRPTAP LSPLPPLPPV HAAAESPVSS YMRYLQNSML
201: SGPSPLAPLV SPRWYQQQQQ ENAPPPEINS RPPHPQSAPA QQSFGCLSSP KSPYGLLSPS LLLSPSSSQL RFPGSPTTVP LPSPKFKGH

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.