Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77690 | Canola | nucleus | 98.25 | 97.39 |
| Bra024996.1-P | Field mustard | nucleus | 89.47 | 89.47 |
| CDY37148 | Canola | cytosol | 76.75 | 77.43 |
| AT5G46780.1 | Thale cress | nucleus | 78.95 | 75.95 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 75.44 | 58.7 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 33.33 | 32.48 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 22.81 | 32.3 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 22.81 | 32.3 |
| Zm00001d030098_P001 | Maize | plastid | 43.42 | 32.14 |
| CDX79596 | Canola | nucleus | 42.11 | 32.11 |
| HORVU1Hr1G050850.1 | Barley | plastid | 42.98 | 31.92 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 22.37 | 31.68 |
| EER91871 | Sorghum | plastid | 43.42 | 31.03 |
| CDX84225 | Canola | nucleus | 45.61 | 30.23 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 39.47 | 28.66 |
| CDY31674 | Canola | nucleus | 44.3 | 28.61 |
| CDY14617 | Canola | nucleus, plastid | 34.65 | 27.05 |
| CDY26860 | Canola | nucleus, plastid | 34.21 | 26.99 |
| CDX88437 | Canola | nucleus, plastid | 28.07 | 25.91 |
| CDX87454 | Canola | nucleus, plastid | 28.07 | 24.9 |
| CDX84616 | Canola | nucleus | 42.98 | 24.08 |
| CDX79256 | Canola | nucleus, plastid | 25.0 | 22.8 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 29.39 | 19.25 |
Protein Annotations
| EnsemblPlants:CDY58504 | EnsemblPlantsGene:GSBRNA2T00023686001 | InterPro:VQ | PANTHER:PTHR33783 | PFAM:PF05678 | ProteinID:CDY58504 |
| ProteinID:CDY58504.1 | SEG:seg | UniParc:UPI0004EED145 | UniProt:A0A078J3Q7 | MapMan:35.2 | : |
Description
BnaA06g40350DBnaA06g40350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3Q7]
Coordinates
chrLK033674:+:32016..33110
Molecular Weight (calculated)
25130.6 Da
IEP (calculated)
10.586
GRAVY (calculated)
-0.779
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHNNDNHH HHHLGVNKMG KNIRKEPSNQ QNQQQNPQAL VYNINKTDFR SIVQQLTGLG SASSVNPPQS TNSNPPKPPN SRLVKVRPAP LTQVNRPPPP
101: HPVQSNPMAS EPVQPINQLS INPAESPISA YMRYLIESSP VGNQPQPHNQ NPVQPSTGLF PSQQTGPNPM LFQSPVSQFV LSPTPRSPFP LLSPNFAFSP
201: RFLGGNESLP PPSPGFFFPL LSPLWKNQ
101: HPVQSNPMAS EPVQPINQLS INPAESPISA YMRYLIESSP VGNQPQPHNQ NPVQPSTGLF PSQQTGPNPM LFQSPVSQFV LSPTPRSPFP LLSPNFAFSP
201: RFLGGNESLP PPSPGFFFPL LSPLWKNQ
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
Arabidopsis Description
At5g46780 [Source:UniProtKB/TrEMBL;Acc:Q9FIP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.