Factsheet for GSMUA_Achr4P27300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03460_001	Banana	nucleus	53.42	39.81
CDX77690	Canola	nucleus	33.33	33.91
CDY58504	Canola	nucleus	32.48	33.33
Bra024996.1-P	Field mustard	nucleus	30.77	31.58
VIT_02s0012g01280.t01	Wine grape	nucleus	38.46	31.47
EER91871	Sorghum	plastid	42.73	31.35
HORVU1Hr1G050850.1	Barley	plastid	40.17	30.62
Zm00001d030098_P001	Maize	plastid	40.17	30.52
AT5G46780.1	Thale cress	nucleus	30.77	30.38
CDY37148	Canola	cytosol	29.06	30.09
KRH74422	Soybean	nucleus	40.17	29.56
Bra022063.1-P	Field mustard	cytosol	28.63	29.13
KRH45443	Soybean	nucleus	35.04	28.08
KRH75619	Soybean	nucleus	34.19	27.68
KRH45449	Soybean	nucleus	35.04	27.42
PGSC0003DMT400005396	Potato	nucleus	40.17	27.25
GSMUA_Achr8P18110_001	Banana	plastid	28.63	26.27
Solyc06g061190.1.1	Tomato	nucleus	39.32	25.0
CDX84225	Canola	nucleus	35.9	24.42
PGSC0003DMT400092612	Potato	nucleus	38.03	23.99
CDY31674	Canola	nucleus	35.9	23.8
Bra017329.1-P	Field mustard	nucleus	33.76	23.1
CDX79596	Canola	nucleus	29.49	23.08
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	28.63	22.87
KRH45444	Soybean	nucleus	34.62	22.44
AT1G32610.1	Thale cress	nucleus	27.78	22.34
Bra005358.1-P	Field mustard	nucleus	35.47	21.07
AT2G35230.1	Thale cress	nucleus	35.9	20.9
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	29.49	19.83
CDX84616	Canola	nucleus	32.91	18.92
Bra023004.1-P	Field mustard	nucleus	33.33	17.85
TraesCS1A01G194500.1	Wheat	cytosol	11.54	16.77
TraesCS1B01G209400.1	Wheat	cytosol	11.54	16.77
TraesCS1D01G198200.1	Wheat	cytosol	11.54	16.77

Protein Annotations

EnsemblPlants:GSMUA_Achr4P27300_001	EnsemblPlants:GSMUA_Achr4T27300_001	EnsemblPlantsGene:GSMUA_Achr4G27300_001	InterPro:VQ	PANTHER:PTHR33783	PFAM:PF05678
SEG:seg	UniParc:UPI000296EAD6	UniProt:M0SSJ2	MapMan:35.2	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27300_001]

Coordinates

chr4:+:26183378..26187950

Molecular Weight (calculated)

26445.3 Da

IEP (calculated)

11.786

GRAVY (calculated)

-1.253

Length

234 amino acids

Sequence
(BLAST)

001: MDHSRNQHHH HQQQHLGVNK LGKNIRKSPL HQPTYYSNPK PQHPPPPLPQ QQQQQPPPPQ PQVYNISKND FRSIVQQLTG TPSRDNSPAP PPPRPRPPQP
101: RPSSTRLQKI RPPPLAPIAR PPPPPLAASR PPPRYPPPIP YQNPNPNLPP AAVDPSSFPR RLPSAAAAGP AWADSPVSAY MRYLESSLIN SDTSRQPHPQ
201: PQQHLPPLPE REREITRGFW SRYMTVDTRS TNRR

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.