Factsheet for PGSC0003DMT400005396

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061190.1.1	Tomato	nucleus	89.28	83.7
PGSC0003DMT400092612	Potato	nucleus	71.59	66.58
KRH74422	Soybean	nucleus	59.71	64.78
VIT_02s0012g01280.t01	Wine grape	nucleus	48.99	59.09
KRH75619	Soybean	nucleus	48.12	57.44
KRH45443	Soybean	nucleus	48.12	56.85
KRH45449	Soybean	nucleus	47.25	54.52
TraesCS1D01G198200.1	Wheat	cytosol	24.06	51.55
TraesCS1B01G209400.1	Wheat	cytosol	24.06	51.55
TraesCS1A01G194500.1	Wheat	cytosol	23.77	50.93
CDX79596	Canola	nucleus	43.77	50.5
CDX84225	Canola	nucleus	48.12	48.26
Zm00001d030098_P001	Maize	plastid	42.03	47.08
Bra017329.1-P	Field mustard	nucleus	46.67	47.08
HORVU1Hr1G050850.1	Barley	plastid	40.87	45.93
AT1G32610.1	Thale cress	nucleus	38.55	45.7
CDY31674	Canola	nucleus	46.67	45.61
KRH45444	Soybean	nucleus	47.25	45.15
EER91871	Sorghum	plastid	41.74	45.14
GSMUA_Achr5P03460_001	Banana	nucleus	38.55	42.36
AT2G35230.1	Thale cress	nucleus	48.7	41.79
Bra005358.1-P	Field mustard	nucleus	46.67	40.86
GSMUA_Achr4P27300_001	Banana	cytosol	27.25	40.17
CDX84616	Canola	nucleus	44.35	37.59
Bra023004.1-P	Field mustard	nucleus	44.64	35.24
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	34.2	33.91
PGSC0003DMT400097756	Potato	nucleus	28.7	30.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400005396	EnsemblPlantsGene:PGSC0003DMG400002107	EntrezGene:102580914	InterPro:VQ	PANTHER:PTHR33783	PFAM:PF05678
PGSC:PGSC0003DMG400002107	RefSeq:XP_015170640.1	SEG:seg	UniParc:UPI0002955D0B	UniProt:M0ZPU0	MapMan:35.2

Description

LRX2 [Source:PGSC_GENE;Acc:PGSC0003DMG400002107]

Coordinates

chr6:-:44748699..44750912

Molecular Weight (calculated)

37447.9 Da

IEP (calculated)

11.755

GRAVY (calculated)

-0.752

Length

345 amino acids

Sequence
(BLAST)

001: MDNSNRSYSR NSDHLGVNKF GKNINKSPIH QPNFNNANSA RQQPQPQVYN INKNDFRSIV QQLTGSPSQE PPPRPPQNPS KPPSMRLQKI RPPPLTPINR
101: PQIPIHPPAQ IPAPARPAGG VPYQNNIVRP PPHYGQPSPP MLPPTPGDVW TNTTESPISV YMRYLQNSII DSGPKLTQFQ GPGHFQAHPA SSGLLPNPSM
201: PPFPSPRMNG PPPLPFARMN GPPPRLLSPR MNGPPLLPSP RMNGPPPPLP SPGINGPPPL PSPTSQYLLP SPTGFLNLLS PRSPYPFLSP GMQHPPPLTP
301: NFFFSPMAQP GGFGAGPQFP PSPGYGFPLS PSGFFPMSSP RWRGQ

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.