CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75619	Soybean	nucleus	61.95	68.17
KRH45443	Soybean	nucleus	61.01	66.44
KRH45449	Soybean	nucleus	60.69	64.55
VIT_02s0012g01280.t01	Wine grape	nucleus	55.97	62.24
PGSC0003DMT400005396	Potato	nucleus	64.78	59.71
PGSC0003DMT400092612	Potato	nucleus	65.09	55.8
Solyc06g061190.1.1	Tomato	nucleus	64.15	55.43
CDX79596	Canola	nucleus	50.31	53.51
KRH45444	Soybean	nucleus	60.69	53.46
CDX84225	Canola	nucleus	53.77	49.71
Bra017329.1-P	Field mustard	nucleus	52.83	49.12
TraesCS1D01G198200.1	Wheat	cytosol	24.84	49.07
TraesCS1B01G209400.1	Wheat	cytosol	24.84	49.07
CDY31674	Canola	nucleus	53.14	47.88
TraesCS1A01G194500.1	Wheat	cytosol	23.9	47.2
Zm00001d030098_P001	Maize	plastid	45.28	46.75
AT1G32610.1	Thale cress	nucleus	42.77	46.74
EER91871	Sorghum	plastid	46.54	46.4
HORVU1Hr1G050850.1	Barley	plastid	44.03	45.6
AT2G35230.1	Thale cress	nucleus	54.4	43.03
GSMUA_Achr5P03460_001	Banana	nucleus	42.45	42.99
Bra005358.1-P	Field mustard	nucleus	52.52	42.39
KRH16774	Soybean	plastid	15.41	41.18
GSMUA_Achr4P27300_001	Banana	cytosol	29.56	40.17
CDX84616	Canola	nucleus	51.26	40.05
Bra023004.1-P	Field mustard	nucleus	51.57	37.53
KRH72387	Soybean	nucleus	24.21	36.32
KRH62312	Soybean	nucleus	31.76	35.19
KRH53024	Soybean	plastid	31.13	33.56
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	35.22	32.18

Protein Annotations

EMBL:ACUP02000024	EnsemblPlants:KRH74422	EnsemblPlantsGene:GLYMA_01G018700	EntrezGene:100776990	InterPro:VQ	PANTHER:PTHR33783
PANTHER:PTHR33783:SF2	PFAM:PF05678	ProteinID:KRH74422	ProteinID:KRH74422.1	SEG:seg	UniParc:UPI00023378E8
UniProt:I1J4V9	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1790049..1792039

Molecular Weight (calculated)

34714.7 Da

IEP (calculated)

11.171

GRAVY (calculated)

-0.769

Length

318 amino acids

Sequence
(BLAST)

001: MDNSKNRHND SLGVNKLGKN IRKSPLHQPN FANNAARQQP QPQVYNISKN DFRDIVQQLT GSPSQDPPPR PPHNPPKPQS MRLQKIRPPP LTPINRPRMP
101: PPMPMPAAPP SVPYNNAIPR PAQFGQPPTP PGDIWSNTTE SPISAYMRYL QNSIMDPGQR GNQVQPQPHP YPQPQVPGNV QPHPPPLSAL LPNPPIPMYP
201: SLRFNGPVPP MNATNPPVPS LPSPQANGPP PLLPSPTSQF LLPSPTGYMN LLSPRSPYPL LSPGIQFPSP LTPNFPFSSM AQPGILGPGP QPPPSPGLMF
301: PLSPSGFFPI SSPRWREH

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.