Factsheet for VIT_02s0012g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74422	Soybean	nucleus	62.24	55.97
KRH75619	Soybean	nucleus	52.45	51.9
KRH45443	Soybean	nucleus	51.75	50.68
TraesCS1A01G194500.1	Wheat	cytosol	27.62	49.07
PGSC0003DMT400005396	Potato	nucleus	59.09	48.99
KRH45449	Soybean	nucleus	51.05	48.83
TraesCS1D01G198200.1	Wheat	cytosol	27.27	48.45
TraesCS1B01G209400.1	Wheat	cytosol	27.27	48.45
Zm00001d030098_P001	Maize	plastid	51.05	47.4
EER91871	Sorghum	plastid	51.75	46.4
CDX79596	Canola	nucleus	48.25	46.15
PGSC0003DMT400092612	Potato	nucleus	58.74	45.28
Solyc06g061190.1.1	Tomato	nucleus	57.34	44.57
HORVU1Hr1G050850.1	Barley	plastid	47.55	44.3
Bra017329.1-P	Field mustard	nucleus	51.05	42.69
CDX84225	Canola	nucleus	50.35	41.86
CDY31674	Canola	nucleus	50.7	41.08
KRH45444	Soybean	nucleus	51.75	41.0
GSMUA_Achr5P03460_001	Banana	nucleus	44.76	40.76
AT1G32610.1	Thale cress	nucleus	39.16	38.49
GSMUA_Achr4P27300_001	Banana	cytosol	31.47	38.46
AT2G35230.1	Thale cress	nucleus	53.5	38.06
Bra005358.1-P	Field mustard	nucleus	50.0	36.29
CDX84616	Canola	nucleus	50.35	35.38
Bra023004.1-P	Field mustard	nucleus	50.35	32.95
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	38.46	31.61
VIT_18s0001g06350.t01	Wine grape	nucleus	35.66	30.45

Protein Annotations

ArrayExpress:VIT_02s0012g01280	EMBL:AM432629	EMBL:FN596247	EnsemblPlants:VIT_02s0012g01280.t01	EnsemblPlantsGene:VIT_02s0012g01280	EntrezGene:100248947
EntrezGene:LOC100248947	InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF2	PFAM:PF05678	ProteinID:CAN80329
ProteinID:CAN80329.1	ProteinID:CCB57903	ProteinID:CCB57903.1	RefSeq:XP_002278180	RefSeq:XP_002278180.1	SEG:seg
UniParc:UPI0002109E70	UniProt:F6HT93	wikigene:100248947	wikigene:LOC100248947	MapMan:35.2	:

Description

No Description!

Coordinates

chr2:-:7389080..7392155

Molecular Weight (calculated)

31052.4 Da

IEP (calculated)

11.466

GRAVY (calculated)

-0.607

Length

286 amino acids

Sequence
(BLAST)

001: MESKNRHNEH LGVNKIGKNI RKSPLHQPNF GNTARQQPQP QVYNISKNDF RNIVQQLTGS PSQEPLPRPP QNPPKHPSMR LQRIRPPPLS PINRPHIPPP
101: ALVPAPAPAL APAPGQVPYN HGLVRPPPQF AQPHPMPVQP LMPGDTSWTH VAESPISAYM RYLQNSIIDS GPRPPLGQGP PRLQSPVLGS VQAQPPVSGL
201: IPNPHYPFPS PSGFLNLLSP RSPYPLLSPG YQFPPPLTPN FSFSPMAGSG ILGPGPQPPP SPGIVFPLSP SGFFPLTSPS PRWRDP

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.