Factsheet for VIT_18s0001g06350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62312	Soybean	nucleus	47.46	55.4
KRH53024	Soybean	plastid	48.06	54.58
KRH16774	Soybean	plastid	18.81	52.94
PGSC0003DMT400097756	Potato	nucleus	50.15	52.34
Solyc04g074520.1.1	Tomato	nucleus	49.85	51.7
Bra035028.1-P	Field mustard	nucleus, plastid	45.07	51.36
AT1G78310.1	Thale cress	nucleus, plastid	46.87	50.48
CDY14617	Canola	nucleus, plastid	42.99	49.32
Bra008356.1-P	Field mustard	nucleus, plastid	41.79	48.44
CDY26860	Canola	nucleus, plastid	41.79	48.44
CDX79256	Canola	nucleus, plastid	34.93	46.8
KRH72387	Soybean	nucleus	29.55	46.7
CDX88437	Canola	nucleus, plastid	32.54	44.13
CDX87454	Canola	nucleus, plastid	33.43	43.58
Os03t0190000-01	Rice	plastid	29.85	40.32
Zm00001d048224_P001	Maize	plastid	28.06	39.83
Zm00001d027998_P001	Maize	plastid	28.96	39.59
OQU93090	Sorghum	plastid	28.96	39.27
GSMUA_Achr8P18110_001	Banana	plastid	27.16	35.69
VIT_02s0012g01280.t01	Wine grape	nucleus	30.45	35.66
HORVU4Hr1G078500.2	Barley	plastid	25.97	28.71

Protein Annotations

ArrayExpress:VIT_18s0001g06350	EMBL:FN595227	EnsemblPlants:VIT_18s0001g06350.t01	EnsemblPlantsGene:VIT_18s0001g06350	EntrezGene:100257517	EntrezGene:LOC100257517
InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1	PFAM:PF05678	ProteinID:CCB45596	ProteinID:CCB45596.1
RefSeq:XP_002284066	RefSeq:XP_002284066.1	SEG:seg	UniParc:UPI00019853C9	UniProt:F6H0X4	wikigene:100257517
wikigene:LOC100257517	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:4751168..4752609

Molecular Weight (calculated)

36617.3 Da

IEP (calculated)

11.212

GRAVY (calculated)

-0.781

Length

335 amino acids

Sequence
(BLAST)

001: MDKSCHSSGD STITTNTSSS TSSSSRDHYL KHLNKISHKI SKPIIRRPTI DHPNHHQYHH PPPQPQPQPQ PQSQPQPQQQ GLQQQQQQQH QPPVYNINKN
101: DFRDVVQKLT GSPAHERFST PPPIQPPKPQ SSRLQRIRPP PLAHVSNRPP LVQVSNRPPH MLNSAVPPPP ASTLNPNNPI NNSVGTFAVP GCTFGNNGRQ
201: VSPLSPLPPF PAVHAAAESP ISAYMRLFQT ADSDPKRLPG FSPLAPLVSP RWTNPAPPPH QTGIPPPPTS TMTSNSSQFG MPSSPLPFGC LPSPRSPYPL
301: LSPSLLFSPS AGQLGFPQFP LSPRLPVPSP RWRDI

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.