Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26860 | Canola | nucleus, plastid | 100.0 | 100.0 |
| Bra035028.1-P | Field mustard | nucleus, plastid | 70.24 | 69.05 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 67.47 | 62.7 |
| KRH16774 | Soybean | plastid | 19.72 | 47.9 |
| KRH53024 | Soybean | plastid | 48.44 | 47.46 |
| KRH62312 | Soybean | nucleus | 47.06 | 47.39 |
| PGSC0003DMT400097756 | Potato | nucleus | 50.52 | 45.48 |
| KRH72387 | Soybean | nucleus | 32.18 | 43.87 |
| Solyc04g074520.1.1 | Tomato | nucleus | 48.79 | 43.65 |
| VIT_18s0001g06350.t01 | Wine grape | nucleus | 48.44 | 41.79 |
| OQU93090 | Sorghum | plastid | 33.22 | 38.87 |
| Os03t0190000-01 | Rice | plastid | 32.53 | 37.9 |
| Zm00001d027998_P001 | Maize | plastid | 31.83 | 37.55 |
| Zm00001d048224_P001 | Maize | plastid | 29.76 | 36.44 |
| GSMUA_Achr8P18110_001 | Banana | plastid | 31.49 | 35.69 |
| Bra024996.1-P | Field mustard | nucleus | 26.3 | 33.33 |
| HORVU4Hr1G078500.2 | Barley | plastid | 31.14 | 29.7 |
| Bra022063.1-P | Field mustard | cytosol | 23.53 | 29.57 |
| Bra017329.1-P | Field mustard | nucleus | 28.72 | 24.27 |
| Bra005358.1-P | Field mustard | nucleus | 28.37 | 20.81 |
| Bra023004.1-P | Field mustard | nucleus | 27.34 | 18.08 |
Protein Annotations
Description
AT1G78310 (E=1e-050) | VQ motif-containing protein
Coordinates
chrA02:-:14997946..14998815
Molecular Weight (calculated)
31194.7 Da
IEP (calculated)
10.956
GRAVY (calculated)
-0.757
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSCNSSRD SSAVSATATS STGNNNTGGN RDHHYLRQLN KLSHKISKPT VASSSSSVSA AVNQETSHQP LPPPPQQPPI NHGNLHQHQP PVYNISKSDF
101: RDVVQKLTGS PAHERISAPP PIHHPRPQQS SRLHRIRPPP LAHVINRPPG LLNDAHRNWS GGFVPRPTAP LSPLPPLPPV HAAAESPVSS YMRYLQNSML
201: SGPSPLAPLV SPRWYQQQQQ ENAPPPEINS RPPHPQSAPA QQSFGCLSSP KSPYGLLSPS LLLSPSSSQL RFPGSPTTVP LPSPKFKGH
101: RDVVQKLTGS PAHERISAPP PIHHPRPQQS SRLHRIRPPP LAHVINRPPG LLNDAHRNWS GGFVPRPTAP LSPLPPLPPV HAAAESPVSS YMRYLQNSML
201: SGPSPLAPLV SPRWYQQQQQ ENAPPPEINS RPPHPQSAPA QQSFGCLSSP KSPYGLLSPS LLLSPSSSQL RFPGSPTTVP LPSPKFKGH
001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
Arabidopsis Description
VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.