Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G35230.1 | Thale cress | nucleus | 66.67 | 56.72 |
| KRH74422 | Soybean | nucleus | 49.12 | 52.83 |
| Bra005358.1-P | Field mustard | nucleus | 60.23 | 52.28 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 42.69 | 51.05 |
| KRH75619 | Soybean | nucleus | 42.11 | 49.83 |
| Bra023004.1-P | Field mustard | nucleus | 62.57 | 48.97 |
| KRH45443 | Soybean | nucleus | 41.23 | 48.29 |
| KRH45449 | Soybean | nucleus | 41.23 | 47.16 |
| PGSC0003DMT400005396 | Potato | nucleus | 47.08 | 46.67 |
| Bra024996.1-P | Field mustard | nucleus | 30.99 | 46.49 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 21.34 | 45.34 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 21.34 | 45.34 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 21.34 | 45.34 |
| Solyc06g061190.1.1 | Tomato | nucleus | 47.37 | 44.02 |
| PGSC0003DMT400092612 | Potato | nucleus | 47.66 | 43.94 |
| Bra022063.1-P | Field mustard | cytosol | 28.36 | 42.17 |
| EER91871 | Sorghum | plastid | 36.84 | 39.5 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 35.96 | 39.17 |
| KRH45444 | Soybean | nucleus | 40.64 | 38.5 |
| Zm00001d030098_P001 | Maize | plastid | 34.5 | 38.31 |
| HORVU1Hr1G050850.1 | Barley | plastid | 34.21 | 38.11 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 23.1 | 33.76 |
| Bra035028.1-P | Field mustard | nucleus, plastid | 24.85 | 28.91 |
| Bra008356.1-P | Field mustard | nucleus, plastid | 24.27 | 28.72 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 27.49 | 27.01 |
Protein Annotations
Description
AT2G35230 (E=1e-045) | VQ motif-containing protein
Coordinates
chrA04:+:15345157..15346185
Molecular Weight (calculated)
37244.8 Da
IEP (calculated)
10.889
GRAVY (calculated)
-0.915
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPRQTDHL GVNKTGKNIR KSPIHQPNFS ANANATARPQ AQPQVYSVSK NDFRSVVQQL TGSPSRESLP RPPPQNNNSP RPQNTRLQRV RPAPLTEINR
101: PALPLPTMPL QQRPHSFVQP PFPQGTQQQQ PVVGHGDQSW SNTAESPISG YMRYLQSSLG DPGPSGNHMQ PGHEQRPYIP AQPQPPPQTQ PQPLQPSQYQ
201: PPPGLVPSPV PRNLPFPQFN GPVPGTPTLP SPRFSQMYGG FPSPRYDGGF PSPWYNSFGP LPSPTGYPNM FSPRSPYPLL SPGVQYPQPL NPNFSFSQLA
301: QPGSHGPGAG AGPSQPPPSP GLMFPPSPSG FFPIPSPRWG GY
101: PALPLPTMPL QQRPHSFVQP PFPQGTQQQQ PVVGHGDQSW SNTAESPISG YMRYLQSSLG DPGPSGNHMQ PGHEQRPYIP AQPQPPPQTQ PQPLQPSQYQ
201: PPPGLVPSPV PRNLPFPQFN GPVPGTPTLP SPRFSQMYGG FPSPRYDGGF PSPWYNSFGP LPSPTGYPNM FSPRSPYPLL SPGVQYPQPL NPNFSFSQLA
301: QPGSHGPGAG AGPSQPPPSP GLMFPPSPSG FFPIPSPRWG GY
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.