CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45443	Soybean	nucleus	80.97	80.14
KRH45449	Soybean	nucleus	80.97	78.26
KRH45444	Soybean	nucleus	79.24	63.43
KRH74422	Soybean	nucleus	68.17	61.95
VIT_02s0012g01280.t01	Wine grape	nucleus	51.9	52.45
TraesCS1D01G198200.1	Wheat	cytosol	26.99	48.45
TraesCS1B01G209400.1	Wheat	cytosol	26.99	48.45
PGSC0003DMT400005396	Potato	nucleus	57.44	48.12
TraesCS1A01G194500.1	Wheat	cytosol	25.95	46.58
PGSC0003DMT400092612	Potato	nucleus	59.17	46.09
CDX79596	Canola	nucleus	47.06	45.48
Solyc06g061190.1.1	Tomato	nucleus	56.06	44.02
CDX84225	Canola	nucleus	51.56	43.31
Zm00001d030098_P001	Maize	plastid	45.67	42.86
CDY31674	Canola	nucleus	52.25	42.78
HORVU1Hr1G050850.1	Barley	plastid	44.98	42.35
Bra017329.1-P	Field mustard	nucleus	49.83	42.11
EER91871	Sorghum	plastid	46.02	41.69
KRH16774	Soybean	plastid	16.26	39.5
GSMUA_Achr5P03460_001	Banana	nucleus	41.87	38.53
AT1G32610.1	Thale cress	nucleus	38.41	38.14
Bra005358.1-P	Field mustard	nucleus	51.9	38.07
AT2G35230.1	Thale cress	nucleus	50.17	36.07
KRH72387	Soybean	nucleus	25.61	34.91
GSMUA_Achr4P27300_001	Banana	cytosol	27.68	34.19
CDX84616	Canola	nucleus	47.75	33.91
Bra023004.1-P	Field mustard	nucleus	47.75	31.58
KRH62312	Soybean	nucleus	31.14	31.36
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	37.37	31.03
KRH53024	Soybean	plastid	30.45	29.83

Protein Annotations

EMBL:ACUP02000424	EnsemblPlants:KRH75619	EnsemblPlantsGene:GLYMA_01G096800	EntrezGene:100784501	InterPro:VQ	PANTHER:PTHR33783
PFAM:PF05678	PRINTS:PR01217	ProteinID:KRH75619	ProteinID:KRH75619.1	SEG:seg	UniParc:UPI000233771C
UniProt:K7K2F3	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:31515610..31517486

Molecular Weight (calculated)

31638.7 Da

IEP (calculated)

10.752

GRAVY (calculated)

-0.752

Length

289 amino acids

Sequence
(BLAST)

001: MDNSKNRHND NLGVNKMGKN IRKSPLHQPN YGNNNNINVG RQQQQPQPQV YNISKNEFRD IVQKLTGSPS QDPQSKPPQN NNSPKPQSMR LQKIRPPPLP
101: HVRPPLPVPY NNTTLPAARP AQFRQQPSPN PLPQVNSIAE SPISAYMRYL EHSITDPASR GAQFQHHPAS SALLPNPPML PLNGTSPPPP VPDVPSPQPN
201: GPPIFPLPSP ISQFLLPSPN GYMNFLSPQP GYPPLLSPGI QFPYPLTPNF PFSPLAQSGI LGPGPQPPLS PGLFPLSPSG FFPITSPRW

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.