Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84616 | Canola | nucleus | 88.29 | 64.86 |
| CDX84225 | Canola | nucleus | 71.24 | 61.92 |
| CDY31674 | Canola | nucleus | 70.57 | 59.77 |
| AT2G35230.1 | Thale cress | nucleus | 70.23 | 52.24 |
| KRH74422 | Soybean | nucleus | 53.51 | 50.31 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 46.15 | 48.25 |
| KRH75619 | Soybean | nucleus | 45.48 | 47.06 |
| KRH45443 | Soybean | nucleus | 45.48 | 46.58 |
| KRH45449 | Soybean | nucleus | 45.15 | 45.15 |
| PGSC0003DMT400005396 | Potato | nucleus | 50.5 | 43.77 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 23.08 | 42.86 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 23.08 | 42.86 |
| PGSC0003DMT400092612 | Potato | nucleus | 52.51 | 42.32 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 22.74 | 42.24 |
| CDY58504 | Canola | nucleus | 32.11 | 42.11 |
| CDY37148 | Canola | cytosol | 31.77 | 42.04 |
| CDX77690 | Canola | nucleus | 32.11 | 41.74 |
| Solyc06g061190.1.1 | Tomato | nucleus | 49.5 | 40.22 |
| KRH45444 | Soybean | nucleus | 45.82 | 37.95 |
| Zm00001d030098_P001 | Maize | plastid | 38.46 | 37.34 |
| EER91871 | Sorghum | plastid | 39.8 | 37.3 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 37.79 | 35.99 |
| HORVU1Hr1G050850.1 | Barley | plastid | 36.79 | 35.83 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 30.77 | 31.4 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 23.08 | 29.49 |
| CDY26860 | Canola | nucleus, plastid | 25.08 | 25.95 |
| CDY14617 | Canola | nucleus, plastid | 25.08 | 25.68 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 29.77 | 25.57 |
| CDX87454 | Canola | nucleus, plastid | 21.4 | 24.9 |
| CDX79256 | Canola | nucleus, plastid | 20.07 | 24.0 |
| CDX88437 | Canola | nucleus, plastid | 19.4 | 23.48 |
Protein Annotations
| EnsemblPlants:CDX79596 | EnsemblPlantsGene:GSBRNA2T00132366001 | InterPro:VQ | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | PFAM:PF05678 |
| ProteinID:CDX79596 | ProteinID:CDX79596.1 | SEG:seg | UniParc:UPI0004EF26DC | MapMan:35.1 | : |
Description
BnaC03g19320D
Coordinates
chrLK031818:+:1020160..1021479
Molecular Weight (calculated)
32718.8 Da
IEP (calculated)
10.555
GRAVY (calculated)
-0.829
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPRQNDHL GVNKIGKNIR KSHLHQPSVY NINRSDFRSI VQQLTGSPSR ESLPRPPQNN SPKPQNTRLQ RIRPPPFMQI NQPGAPVHHH HPHSLMRPPP
101: PQWHMPQVAQ QQPMMGQGDQ FGSNTTESPL LGYMPYLQSP LGDAGPSGNQ MRPPAQPQSQ PQPQPYMPVS RNLPPPQFNG PVPVTPALPS PSFNQMYNGF
201: HSPQYNGFGS LQSPTSQFGL PSPTYPNMLS PRSPYPLLSP GVQYPQPLTP NFSFSQLAQS GSSGPGAGPG LPQPPPSPGL VFPLSPGLFP VPSPSWGDY
101: PQWHMPQVAQ QQPMMGQGDQ FGSNTTESPL LGYMPYLQSP LGDAGPSGNQ MRPPAQPQSQ PQPQPYMPVS RNLPPPQFNG PVPVTPALPS PSFNQMYNGF
201: HSPQYNGFGS LQSPTSQFGL PSPTYPNMLS PRSPYPLLSP GVQYPQPLTP NFSFSQLAQS GSSGPGAGPG LPQPPPSPGL VFPLSPGLFP VPSPSWGDY
001: MDRTCWYYDQ LGVNKIGKNI KKSPLPQPQG YSMSNNDFTS IVQQLTDSPS RESLPQPLPR NLLKPQQKIR PVGQIQINRP CVPPPVMAQP THEFVARPPM
101: HPLPHGSQPI ISHGDQFGSN TAESSVSVYM RYRQSSLGDS GPNENQMQPS HDNQQQPQVE GQAQSHNHHS PRFNDSARNT PILPTPKFDG PPQQMHNNSL
201: PSPRFNGRGI LPTPTSQYRP QSPTAYRNLL SPRSPSPLLS TGVQYPPPLT PRNYTFSSMD QPGILGPGTI PLPHASPFGV IPISSQRWRG Y
101: HPLPHGSQPI ISHGDQFGSN TAESSVSVYM RYRQSSLGDS GPNENQMQPS HDNQQQPQVE GQAQSHNHHS PRFNDSARNT PILPTPKFDG PPQQMHNNSL
201: PSPRFNGRGI LPTPTSQYRP QSPTAYRNLL SPRSPSPLLS TGVQYPPPLT PRNYTFSSMD QPGILGPGTI PLPHASPFGV IPISSQRWRG Y
Arabidopsis Description
At1g32610 [Source:UniProtKB/TrEMBL;Acc:Q9LPK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.