Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022063.1-P | Field mustard | cytosol | 91.59 | 90.0 |
| CDY58504 | Canola | nucleus | 77.43 | 76.75 |
| CDX77690 | Canola | nucleus | 77.43 | 76.09 |
| AT5G46780.1 | Thale cress | nucleus | 76.55 | 73.0 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 84.07 | 64.85 |
| CDX79596 | Canola | nucleus | 42.04 | 31.77 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 22.57 | 31.68 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 22.57 | 31.68 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 22.12 | 31.06 |
| HORVU1Hr1G050850.1 | Barley | plastid | 40.71 | 29.97 |
| Zm00001d030098_P001 | Maize | plastid | 39.82 | 29.22 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 30.09 | 29.06 |
| CDX84225 | Canola | nucleus | 43.36 | 28.49 |
| EER91871 | Sorghum | plastid | 39.82 | 28.21 |
| CDY31674 | Canola | nucleus | 42.92 | 27.48 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 36.28 | 26.11 |
| CDY26860 | Canola | nucleus, plastid | 31.86 | 24.91 |
| CDY14617 | Canola | nucleus, plastid | 31.42 | 24.32 |
| CDX84616 | Canola | nucleus | 42.04 | 23.34 |
| CDX88437 | Canola | nucleus, plastid | 24.78 | 22.67 |
| CDX87454 | Canola | nucleus, plastid | 25.66 | 22.57 |
| CDX79256 | Canola | nucleus, plastid | 23.45 | 21.2 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 28.76 | 18.68 |
Protein Annotations
| EnsemblPlants:CDY37148 | EnsemblPlantsGene:GSBRNA2T00063396001 | InterPro:VQ | PANTHER:PTHR33783 | PFAM:PF05678 | ProteinID:CDY37148 |
| ProteinID:CDY37148.1 | SEG:seg | UniParc:UPI0004EDC075 | UniProt:A0A078HJX1 | MapMan:35.2 | : |
Description
BnaA02g24670DBnaA02g24670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJX1]
Coordinates
chrLK032393:+:36856..37536
Molecular Weight (calculated)
24874.3 Da
IEP (calculated)
10.734
GRAVY (calculated)
-0.752
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDQRNSDNH HQHHHLGVNK IGKNIRKDSS NQQNQQQNPQ ALFFNINKTD FRSIVQQLTG LGSASSVNPP QSTNPPKPPN SRLVKVRPAP LTQVNHHPPP
101: PPVQSDPIAE RNNQLSVNPA ESPISAYMRY LIESSPVGNQ PQLQNQNPTQ PSPGLIPSHQ SGPSPMLFQS PASQFVLSPP PRSPFPILSP NFFAFSPRFI
201: AGGNEPLPPP SPGFFFPLLS PLWKSQ
101: PPVQSDPIAE RNNQLSVNPA ESPISAYMRY LIESSPVGNQ PQLQNQNPTQ PSPGLIPSHQ SGPSPMLFQS PASQFVLSPP PRSPFPILSP NFFAFSPRFI
201: AGGNEPLPPP SPGFFFPLLS PLWKSQ
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
Arabidopsis Description
At5g46780 [Source:UniProtKB/TrEMBL;Acc:Q9FIP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.