Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91871 | Sorghum | plastid | 87.34 | 84.33 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 42.86 | 81.99 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 42.86 | 81.99 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 42.86 | 81.99 |
| HORVU1Hr1G050850.1 | Barley | plastid | 71.43 | 71.66 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 59.74 | 52.87 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 47.4 | 51.05 |
| KRH75619 | Soybean | nucleus | 42.86 | 45.67 |
| KRH45443 | Soybean | nucleus | 43.18 | 45.55 |
| KRH74422 | Soybean | nucleus | 46.75 | 45.28 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 44.81 | 43.95 |
| KRH45449 | Soybean | nucleus | 42.21 | 43.48 |
| CDY58504 | Canola | nucleus | 32.14 | 43.42 |
| CDX77690 | Canola | nucleus | 32.14 | 43.04 |
| Bra024996.1-P | Field mustard | nucleus | 31.17 | 42.11 |
| PGSC0003DMT400005396 | Potato | nucleus | 47.08 | 42.03 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 30.52 | 40.17 |
| CDY37148 | Canola | cytosol | 29.22 | 39.82 |
| AT5G46780.1 | Thale cress | nucleus | 30.19 | 39.24 |
| CDX79596 | Canola | nucleus | 37.34 | 38.46 |
| Bra022063.1-P | Field mustard | cytosol | 28.57 | 38.26 |
| PGSC0003DMT400092612 | Potato | nucleus | 45.78 | 38.01 |
| Solyc06g061190.1.1 | Tomato | nucleus | 44.81 | 37.5 |
| CDX84225 | Canola | nucleus | 40.91 | 36.63 |
| KRH45444 | Soybean | nucleus | 42.53 | 36.29 |
| CDY31674 | Canola | nucleus | 40.91 | 35.69 |
| Zm00001d048224_P001 | Maize | plastid | 26.62 | 34.75 |
| Bra017329.1-P | Field mustard | nucleus | 38.31 | 34.5 |
| Zm00001d027998_P001 | Maize | plastid | 26.95 | 33.88 |
| AT1G32610.1 | Thale cress | nucleus | 31.82 | 33.68 |
| Bra005358.1-P | Field mustard | nucleus | 40.91 | 31.98 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 29.22 | 30.72 |
| AT2G35230.1 | Thale cress | nucleus | 39.94 | 30.6 |
| CDX84616 | Canola | nucleus | 37.99 | 28.75 |
| Bra023004.1-P | Field mustard | nucleus | 38.31 | 27.0 |
Protein Annotations
| EMBL:BT038806 | EMBL:BT042888 | EnsemblPlants:Zm00001d030098_P001 | EnsemblPlants:Zm00001d030098_T001 | EnsemblPlantsGene:Zm00001d030098 | EntrezGene:100272484 |
| InterPro:VQ | ncoils:Coil | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | PFAM:PF05678 | ProteinID:ONM00156.1 |
| SEG:seg | UniParc:UPI00017B7779 | UniProt:B4FNW8 | MapMan:35.2 | : | : |
Description
Protein HAIKU1
Coordinates
chr1:-:105553409..105554335
Molecular Weight (calculated)
32571.7 Da
IEP (calculated)
12.222
GRAVY (calculated)
-0.653
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRTTSNNSS SASSTTSAGS QNPHLGVNKL GRSIRKATPP PPPQPQPAAN RPPQPQPQVY NISKNQFRDI VQQLTAGTPS PPPPQHHHQL AHRPPQPQPK
101: TPSMRLQRIR PPPIATPVAR PPPVHPNHHA VPHNPNHNYP VFHRPPPPQP QAQHMPAPGP AWADSPVSAY MRILENSLFS ATPPGAAAAA AAAAAAAAGQ
201: LPHPHHQPSH PHPPPVPSPG ILPSPSSFLN LLSPTPRSPY PLLSPGFQHP PPLTPNFPAL SPLAGTGILG PGPMPPPPSP GLWFPQSPSG LLSPSGFLPS
301: LSPRWRDI
101: TPSMRLQRIR PPPIATPVAR PPPVHPNHHA VPHNPNHNYP VFHRPPPPQP QAQHMPAPGP AWADSPVSAY MRILENSLFS ATPPGAAAAA AAAAAAAAGQ
201: LPHPHHQPSH PHPPPVPSPG ILPSPSSFLN LLSPTPRSPY PLLSPGFQHP PPLTPNFPAL SPLAGTGILG PGPMPPPPSP GLWFPQSPSG LLSPSGFLPS
301: LSPRWRDI
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.