Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- endoplasmic reticulum 3
- extracellular 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37148 | Canola | cytosol | 64.85 | 84.07 |
| CDY58504 | Canola | nucleus | 58.7 | 75.44 |
| AT5G46780.1 | Thale cress | nucleus | 60.07 | 74.26 |
| CDX77690 | Canola | nucleus | 57.68 | 73.48 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 17.75 | 32.3 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 17.75 | 32.3 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 17.41 | 31.68 |
| CDX79596 | Canola | nucleus | 31.4 | 30.77 |
| HORVU1Hr1G050850.1 | Barley | plastid | 31.74 | 30.29 |
| Zm00001d030098_P001 | Maize | plastid | 30.72 | 29.22 |
| EER91871 | Sorghum | plastid | 31.74 | 29.15 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 22.87 | 28.63 |
| CDX84225 | Canola | nucleus | 33.45 | 28.49 |
| CDY31674 | Canola | nucleus | 33.11 | 27.48 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 27.3 | 25.48 |
| CDY14617 | Canola | nucleus, plastid | 24.91 | 25.0 |
| CDY26860 | Canola | nucleus, plastid | 24.57 | 24.91 |
| CDX87454 | Canola | nucleus, plastid | 20.48 | 23.35 |
| CDX84616 | Canola | nucleus | 32.08 | 23.1 |
| CDX79256 | Canola | nucleus, plastid | 19.11 | 22.4 |
| CDX88437 | Canola | nucleus, plastid | 18.77 | 22.27 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 21.5 | 18.1 |
Protein Annotations
| EnsemblPlants:CDX87678 | EnsemblPlantsGene:GSBRNA2T00146690001 | GO:A0A078DKA7 | InterPro:VQ | PANTHER:PTHR33783 | PFAM:PF05678 |
| ProteinID:CDX87678 | ProteinID:CDX87678.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE85A2 | MapMan:35.2 |
Description
BnaC02g32710D
Coordinates
chrLK031851:-:101646..102871
Molecular Weight (calculated)
32627.0 Da
IEP (calculated)
10.905
GRAVY (calculated)
-0.378
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFFSASYS HCISVKILKI ANNIFTFNKI KLSFVLSLKH LLVLFFSSSS SFFQVLITLV NIRKLMDDQR NSDNHHHHLG VNKIGKNIRK DPSNQQNQQQ
101: NPQALFYNIN KTDFRSIVQQ LTGLGSASSV NPPQSTNPPK PPNSRLVKVR PAPLTQVNHH PPPHPVQSDP IAAETVERNN QLSVNPAESP ISAYMRYLIE
201: SSPVGNRPQL QNQNPAQPSP GLFPSHQPGP SPMLFQSPAS QFVLSPPPRS PFPILSPNFF TFSPRFIAGG NESLPPPSPG FFFPLLSPLW KNQ
101: NPQALFYNIN KTDFRSIVQQ LTGLGSASSV NPPQSTNPPK PPNSRLVKVR PAPLTQVNHH PPPHPVQSDP IAAETVERNN QLSVNPAESP ISAYMRYLIE
201: SSPVGNRPQL QNQNPAQPSP GLFPSHQPGP SPMLFQSPAS QFVLSPPPRS PFPILSPNFF TFSPRFIAGG NESLPPPSPG FFFPLLSPLW KNQ
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
Arabidopsis Description
At5g46780 [Source:UniProtKB/TrEMBL;Acc:Q9FIP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.