Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26860 | Canola | nucleus, plastid | 70.0 | 60.55 |
| CDY14617 | Canola | nucleus, plastid | 69.6 | 59.59 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 63.2 | 50.8 |
| CDX88437 | Canola | nucleus, plastid | 47.6 | 48.18 |
| CDX87454 | Canola | nucleus, plastid | 48.8 | 47.47 |
| KRH16774 | Soybean | plastid | 20.4 | 42.86 |
| KRH72387 | Soybean | nucleus | 33.2 | 39.15 |
| KRH53024 | Soybean | plastid | 44.8 | 37.97 |
| KRH62312 | Soybean | nucleus | 42.8 | 37.28 |
| PGSC0003DMT400097756 | Potato | nucleus | 45.2 | 35.2 |
| VIT_18s0001g06350.t01 | Wine grape | nucleus | 46.8 | 34.93 |
| Solyc04g074520.1.1 | Tomato | nucleus | 44.4 | 34.37 |
| Zm00001d048224_P001 | Maize | plastid | 32.4 | 34.32 |
| OQU93090 | Sorghum | plastid | 33.2 | 33.6 |
| Os03t0190000-01 | Rice | plastid | 32.8 | 33.06 |
| Zm00001d027998_P001 | Maize | plastid | 32.0 | 32.65 |
| GSMUA_Achr8P18110_001 | Banana | plastid | 32.0 | 31.37 |
| HORVU4Hr1G078500.2 | Barley | plastid | 32.4 | 26.73 |
| CDY58504 | Canola | nucleus | 22.8 | 25.0 |
| CDX77690 | Canola | nucleus | 22.8 | 24.78 |
| CDY37148 | Canola | cytosol | 21.2 | 23.45 |
| CDX79596 | Canola | nucleus | 24.0 | 20.07 |
| CDX84225 | Canola | nucleus | 27.2 | 19.77 |
| CDY31674 | Canola | nucleus | 27.2 | 19.26 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 22.4 | 19.11 |
| CDX84616 | Canola | nucleus | 25.6 | 15.72 |
Protein Annotations
| EnsemblPlants:CDX79256 | EnsemblPlantsGene:GSBRNA2T00131884001 | InterPro:VQ | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF1 | PFAM:PF05678 |
| ProteinID:CDX79256 | ProteinID:CDX79256.1 | SEG:seg | UniParc:UPI0004EE11A8 | MapMan:35.1 | : |
Description
BnaC06g20470D
Coordinates
chrLK031817:-:783075..784010
Molecular Weight (calculated)
27269.0 Da
IEP (calculated)
9.937
GRAVY (calculated)
-0.763
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDKSCNSSG DSSALSATAT SSTGDNTGSR DHHYLRQLHK LSHKISKPSS SVSAAVNQET DHQPPPPPPL SQPPINHGNL HPHQPPVYNI SKNDFRDAVQ
101: KLTGSPAHER ISAQPIHHPK AQQSSRLHRI RPPPLAHVIN RPPSLLNDAH HDWTGGFVPR PTAPLSPLPP LPSVHAAAES PVSSYMRYLQ NSMFAMDSNR
201: RELCGSSPLA PLVSPRWYQQ QHEKALPPQN SSSPPCQLGF PTTLPLTSPK
101: KLTGSPAHER ISAQPIHHPK AQQSSRLHRI RPPPLAHVIN RPPSLLNDAH HDWTGGFVPR PTAPLSPLPP LPSVHAAAES PVSSYMRYLQ NSMFAMDSNR
201: RELCGSSPLA PLVSPRWYQQ QHEKALPPQN SSSPPCQLGF PTTLPLTSPK
001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
Arabidopsis Description
VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.