Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87454 | Canola | nucleus, plastid | 83.4 | 80.16 |
| Bra035028.1-P | Field mustard | nucleus, plastid | 72.06 | 60.54 |
| CDY26860 | Canola | nucleus, plastid | 62.35 | 53.29 |
| CDY14617 | Canola | nucleus, plastid | 61.13 | 51.71 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 61.94 | 49.2 |
| CDX79256 | Canola | nucleus, plastid | 48.18 | 47.6 |
| KRH16774 | Soybean | plastid | 20.24 | 42.02 |
| KRH53024 | Soybean | plastid | 42.51 | 35.59 |
| KRH62312 | Soybean | nucleus | 39.68 | 34.15 |
| PGSC0003DMT400097756 | Potato | nucleus | 43.72 | 33.64 |
| Solyc04g074520.1.1 | Tomato | nucleus | 43.32 | 33.13 |
| KRH72387 | Soybean | nucleus | 27.94 | 32.55 |
| VIT_18s0001g06350.t01 | Wine grape | nucleus | 44.13 | 32.54 |
| CDX77690 | Canola | nucleus | 26.32 | 28.26 |
| CDY58504 | Canola | nucleus | 25.91 | 28.07 |
| Os03t0190000-01 | Rice | plastid | 27.94 | 27.82 |
| Zm00001d027998_P001 | Maize | plastid | 27.53 | 27.76 |
| OQU93090 | Sorghum | plastid | 27.53 | 27.53 |
| Zm00001d048224_P001 | Maize | plastid | 25.1 | 26.27 |
| GSMUA_Achr8P18110_001 | Banana | plastid | 25.91 | 25.1 |
| CDY37148 | Canola | cytosol | 22.67 | 24.78 |
| HORVU4Hr1G078500.2 | Barley | plastid | 25.51 | 20.79 |
| CDX84225 | Canola | nucleus | 27.13 | 19.48 |
| CDX79596 | Canola | nucleus | 23.48 | 19.4 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 22.27 | 18.77 |
| CDY31674 | Canola | nucleus | 25.91 | 18.13 |
| CDX84616 | Canola | nucleus | 25.1 | 15.23 |
Protein Annotations
| EnsemblPlants:CDX88437 | EnsemblPlantsGene:GSBRNA2T00147979001 | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF1 | ProteinID:CDX88437 | ProteinID:CDX88437.1 |
| SEG:seg | UniParc:UPI0004EDE704 | MapMan:35.1 | : | : | : |
Description
BnaC06g38810D
Coordinates
chrLK031855:-:1014226..1015089
Molecular Weight (calculated)
26439.1 Da
IEP (calculated)
10.696
GRAVY (calculated)
-0.641
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSCNSSGD SASVNNRDNH HLRQLNKLSH KISKPTTTSS SSSSISAAVN QETDHQFPHP PPQQQINHGN LHQHQPPSSR LHRIRPPPLA HVINRPPPSL
101: NNAALVPPPS WSGGFVAPRH TAPLSPLPPL PPVHAAAESP VSSYMRYLQN SMFAVESNRR EFSGLSPLAP LVSPRWYQQQ QENAPPPVNS GRPPPGTVSQ
201: APPQSLGCLS SPKSPYGLLS PSLLLSPTSG QLGFPASPTT VPLPSPK
101: NNAALVPPPS WSGGFVAPRH TAPLSPLPPL PPVHAAAESP VSSYMRYLQN SMFAVESNRR EFSGLSPLAP LVSPRWYQQQ QENAPPPVNS GRPPPGTVSQ
201: APPQSLGCLS SPKSPYGLLS PSLLLSPTSG QLGFPASPTT VPLPSPK
001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
Arabidopsis Description
VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.