CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26860	Canola	nucleus, plastid	83.56	84.43
CDX79256	Canola	nucleus, plastid	59.59	69.6
AT1G78310.1	Thale cress	nucleus, plastid	68.15	63.99
CDX88437	Canola	nucleus, plastid	51.71	61.13
CDX87454	Canola	nucleus, plastid	51.71	58.75
KRH62312	Soybean	nucleus	46.23	47.04
KRH53024	Soybean	plastid	47.26	46.78
PGSC0003DMT400097756	Potato	nucleus	51.37	46.73
KRH16774	Soybean	plastid	18.84	46.22
Solyc04g074520.1.1	Tomato	nucleus	49.66	44.89
VIT_18s0001g06350.t01	Wine grape	nucleus	49.32	42.99
KRH72387	Soybean	nucleus	31.16	42.92
OQU93090	Sorghum	plastid	32.19	38.06
Os03t0190000-01	Rice	plastid	31.85	37.5
GSMUA_Achr8P18110_001	Banana	plastid	31.85	36.47
Zm00001d048224_P001	Maize	plastid	29.45	36.44
Zm00001d027998_P001	Maize	plastid	30.48	36.33
CDY58504	Canola	nucleus	27.05	34.65
CDX77690	Canola	nucleus	27.05	34.35
CDY37148	Canola	cytosol	24.32	31.42
HORVU4Hr1G078500.2	Barley	plastid	29.79	28.71
CDX79596	Canola	nucleus	25.68	25.08
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	25.0	24.91
CDX84225	Canola	nucleus	27.4	23.26
CDY31674	Canola	nucleus	27.05	22.38
CDX84616	Canola	nucleus	27.74	19.9

Protein Annotations

EnsemblPlants:CDY14617	EnsemblPlantsGene:GSBRNA2T00084357001	InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1	PFAM:PF05678
ProteinID:CDY14617	ProteinID:CDY14617.1	SEG:seg	UniParc:UPI0004EDB662	UniProt:A0A078FP29	MapMan:35.1

Description

BnaC02g24960DBnaC02g24960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP29]

Coordinates

chrLK032045:+:345988..346866

Molecular Weight (calculated)

31567.1 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.783

Length

292 amino acids

Sequence
(BLAST)

001: MDKSCNSSGD SSAVSATATS STGNNTGGNR DHHYLRRLNK LSHKISKPTA ASSSSVSAAV NQETNHQPLP PPPQQPPINH GNLHQHQPPV YNISKSDFRD
101: VVQKLTGSPA HERISAPPQQ QIHHSKAQQS SRLHRIRPPP LAHVINRPPP LLNDAHRNWS GGFFPRPTAP LSPLPPLPPV HAAAESPVSS YMRYLQNSMF
201: SGPSPLAPLV SPRWYQQQQQ ENAPPPEINS RPPHHPPPPS AQALQSFGCL SSPKSPYGLP SPSLLLSPSS SQLRFPGSPT TVPLPSPKFK GH

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.