Factsheet for AT1G78310.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035028.1-P	Field mustard	nucleus, plastid	64.95	68.71
CDY14617	Canola	nucleus, plastid	63.99	68.15
Bra008356.1-P	Field mustard	nucleus, plastid	62.7	67.47
CDY26860	Canola	nucleus, plastid	62.7	67.47
CDX79256	Canola	nucleus, plastid	50.8	63.2
CDX88437	Canola	nucleus, plastid	49.2	61.94
CDX87454	Canola	nucleus, plastid	50.48	61.09
KRH53024	Soybean	plastid	47.27	49.83
KRH62312	Soybean	nucleus	45.66	49.48
PGSC0003DMT400097756	Potato	nucleus	49.52	47.98
Solyc04g074520.1.1	Tomato	nucleus	48.87	47.06
KRH16774	Soybean	plastid	18.01	47.06
VIT_18s0001g06350.t01	Wine grape	nucleus	50.48	46.87
KRH72387	Soybean	nucleus	30.87	45.28
OQU93090	Sorghum	plastid	29.9	37.65
Os03t0190000-01	Rice	plastid	29.58	37.1
Zm00001d027998_P001	Maize	plastid	28.94	36.73
Zm00001d048224_P001	Maize	plastid	26.37	34.75
GSMUA_Achr8P18110_001	Banana	plastid	27.33	33.33
AT5G46780.1	Thale cress	nucleus	25.08	32.91
HORVU4Hr1G078500.2	Barley	plastid	27.01	27.72
AT1G32610.1	Thale cress	nucleus	21.22	22.68
AT2G35230.1	Thale cress	nucleus	27.33	21.14

Protein Annotations

MapMan:35.1	EntrezGene:844166	ProteinID:AAF71801.1	ProteinID:AEE36094.1	ArrayExpress:AT1G78310	EnsemblPlantsGene:AT1G78310
RefSeq:AT1G78310	TAIR:AT1G78310	RefSeq:AT1G78310-TAIR-G	EnsemblPlants:AT1G78310.1	TAIR:AT1G78310.1	EMBL:AY065462
EMBL:AY087538	EMBL:AY117330	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006883	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0019725
GO:GO:0030007	GO:GO:0043433	GO:GO:1901001	RefSeq:NP_565177.1	PFAM:PF05678	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020100	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1	UniProt:Q9M9F0
UniParc:UPI00000A68EE	InterPro:VQ	SEG:seg	:	:	:

Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]

Coordinates

chr1:-:29463548..29465249

Molecular Weight (calculated)

33578.6 Da

IEP (calculated)

10.416

GRAVY (calculated)

-0.635

Length

311 amino acids

Sequence
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.