Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74422 | Soybean | nucleus | 46.74 | 42.77 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 38.49 | 39.16 |
| PGSC0003DMT400005396 | Potato | nucleus | 45.7 | 38.55 |
| KRH75619 | Soybean | nucleus | 38.14 | 38.41 |
| KRH45443 | Soybean | nucleus | 38.14 | 38.01 |
| AT2G35230.1 | Thale cress | nucleus | 51.89 | 37.56 |
| KRH45449 | Soybean | nucleus | 37.46 | 36.45 |
| PGSC0003DMT400092612 | Potato | nucleus | 45.36 | 35.58 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 19.59 | 35.4 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 19.59 | 35.4 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 19.24 | 34.78 |
| Solyc06g061190.1.1 | Tomato | nucleus | 43.64 | 34.51 |
| Zm00001d030098_P001 | Maize | plastid | 33.68 | 31.82 |
| HORVU1Hr1G050850.1 | Barley | plastid | 33.33 | 31.6 |
| AT5G46780.1 | Thale cress | nucleus | 25.43 | 31.22 |
| EER91871 | Sorghum | plastid | 34.02 | 31.03 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 33.33 | 30.89 |
| KRH45444 | Soybean | nucleus | 37.46 | 30.19 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 22.34 | 27.78 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 27.49 | 22.99 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 22.68 | 21.22 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840156 | UniProt:A0A178WKW0 | ProteinID:AAF25981.1 | ProteinID:AEE31510.1 | ProteinID:AEE31511.1 |
| EMBL:AK175515 | EMBL:AK176587 | ArrayExpress:AT1G32610 | EnsemblPlantsGene:AT1G32610 | RefSeq:AT1G32610 | TAIR:AT1G32610 |
| RefSeq:AT1G32610-TAIR-G | EnsemblPlants:AT1G32610.1 | TAIR:AT1G32610.1 | Unigene:At.40102 | EMBL:BT010437 | GO:GO:0003674 |
| GO:GO:0008150 | RefSeq:NP_001031129.1 | RefSeq:NP_174539.1 | ProteinID:OAP18960.1 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PANTHER:PTHR33783 |
| PANTHER:PTHR33783:SF2 | UniProt:Q9LPK0 | UniParc:UPI00000A2ED3 | SEG:seg | : | : |
Description
At1g32610 [Source:UniProtKB/TrEMBL;Acc:Q9LPK0]
Coordinates
chr1:-:11795609..11797141
Molecular Weight (calculated)
32363.2 Da
IEP (calculated)
10.200
GRAVY (calculated)
-0.875
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRTCWYYDQ LGVNKIGKNI KKSPLPQPQG YSMSNNDFTS IVQQLTDSPS RESLPQPLPR NLLKPQQKIR PVGQIQINRP CVPPPVMAQP THEFVARPPM
101: HPLPHGSQPI ISHGDQFGSN TAESSVSVYM RYRQSSLGDS GPNENQMQPS HDNQQQPQVE GQAQSHNHHS PRFNDSARNT PILPTPKFDG PPQQMHNNSL
201: PSPRFNGRGI LPTPTSQYRP QSPTAYRNLL SPRSPSPLLS TGVQYPPPLT PRNYTFSSMD QPGILGPGTI PLPHASPFGV IPISSQRWRG Y
101: HPLPHGSQPI ISHGDQFGSN TAESSVSVYM RYRQSSLGDS GPNENQMQPS HDNQQQPQVE GQAQSHNHHS PRFNDSARNT PILPTPKFDG PPQQMHNNSL
201: PSPRFNGRGI LPTPTSQYRP QSPTAYRNLL SPRSPSPLLS TGVQYPPPLT PRNYTFSSMD QPGILGPGTI PLPHASPFGV IPISSQRWRG Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.