Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G198200.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 91.93 | 91.93 |
| HORVU1Hr1G050850.1 | Barley | plastid | 89.44 | 46.91 |
| Zm00001d030098_P001 | Maize | plastid | 81.99 | 42.86 |
| EER91871 | Sorghum | plastid | 81.99 | 41.38 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 78.88 | 36.49 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 48.45 | 27.27 |
| KRH75619 | Soybean | nucleus | 48.45 | 26.99 |
| KRH45443 | Soybean | nucleus | 48.45 | 26.71 |
| KRH45449 | Soybean | nucleus | 46.58 | 25.08 |
| KRH74422 | Soybean | nucleus | 49.07 | 24.84 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 47.83 | 24.52 |
| PGSC0003DMT400005396 | Potato | nucleus | 51.55 | 24.06 |
| Bra024996.1-P | Field mustard | nucleus | 32.92 | 23.25 |
| CDX79596 | Canola | nucleus | 42.86 | 23.08 |
| CDY58504 | Canola | nucleus | 32.3 | 22.81 |
| Bra022063.1-P | Field mustard | cytosol | 32.3 | 22.61 |
| CDX77690 | Canola | nucleus | 32.3 | 22.61 |
| CDY37148 | Canola | cytosol | 31.68 | 22.57 |
| Solyc06g061190.1.1 | Tomato | nucleus | 49.69 | 21.74 |
| PGSC0003DMT400092612 | Potato | nucleus | 49.69 | 21.56 |
| Bra017329.1-P | Field mustard | nucleus | 45.34 | 21.34 |
| KRH45444 | Soybean | nucleus | 46.58 | 20.78 |
| AT5G46780.1 | Thale cress | nucleus | 30.43 | 20.68 |
| CDX84225 | Canola | nucleus | 43.48 | 20.35 |
| CDY31674 | Canola | nucleus | 43.48 | 19.83 |
| AT1G32610.1 | Thale cress | nucleus | 35.4 | 19.59 |
| AT2G35230.1 | Thale cress | nucleus | 47.2 | 18.91 |
| Bra005358.1-P | Field mustard | nucleus | 43.48 | 17.77 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 32.3 | 17.75 |
| CDX84616 | Canola | nucleus | 40.37 | 15.97 |
| Bra023004.1-P | Field mustard | nucleus | 40.99 | 15.1 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 16.77 | 11.54 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G209400.1 | EnsemblPlantsGene:TraesCS1B01G209400 | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:+:380432025..380433963
Molecular Weight (calculated)
16423.9 Da
IEP (calculated)
9.829
GRAVY (calculated)
-0.075
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMPPPGPAW ADSPVSAYMR ILENSLFSAT PPGAAAAAAA AAHAHAAAAA AAAGRGPPQH PYHPPPPPVP SPGILPSPTG FLNLLSPTPR SPYPLLSPGF
101: QQPPPLTPNF PMLSPLPGTG ILGPGPMPPP PSPGLWFPQS PSGLLSPSGF FPLLSPRWRD M
101: QQPPPLTPNF PMLSPLPGTG ILGPGPMPPP PSPGLWFPQS PSGLLSPSGF FPLLSPRWRD M
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.