Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58504 | Canola | nucleus | 97.39 | 98.25 |
| Bra024996.1-P | Field mustard | nucleus | 87.39 | 88.16 |
| CDY37148 | Canola | cytosol | 76.09 | 77.43 |
| AT5G46780.1 | Thale cress | nucleus | 77.83 | 75.53 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 73.48 | 57.68 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 33.91 | 33.33 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 22.61 | 32.3 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 22.61 | 32.3 |
| Zm00001d030098_P001 | Maize | plastid | 43.04 | 32.14 |
| CDX79596 | Canola | nucleus | 41.74 | 32.11 |
| HORVU1Hr1G050850.1 | Barley | plastid | 42.61 | 31.92 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 22.17 | 31.68 |
| EER91871 | Sorghum | plastid | 43.04 | 31.03 |
| CDX84225 | Canola | nucleus | 45.65 | 30.52 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 40.0 | 29.3 |
| CDY31674 | Canola | nucleus | 44.35 | 28.9 |
| CDY14617 | Canola | nucleus, plastid | 34.35 | 27.05 |
| CDY26860 | Canola | nucleus, plastid | 33.91 | 26.99 |
| CDX88437 | Canola | nucleus, plastid | 28.26 | 26.32 |
| CDX87454 | Canola | nucleus, plastid | 28.26 | 25.29 |
| CDX84616 | Canola | nucleus | 42.61 | 24.08 |
| CDX79256 | Canola | nucleus, plastid | 24.78 | 22.8 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 29.13 | 19.25 |
Protein Annotations
| EnsemblPlants:CDX77690 | EnsemblPlantsGene:GSBRNA2T00128663001 | InterPro:VQ | PANTHER:PTHR33783 | PFAM:PF05678 | ProteinID:CDX77690 |
| ProteinID:CDX77690.1 | SEG:seg | UniParc:UPI0004EBB7F2 | MapMan:35.2 | : | : |
Description
BnaC07g19440D
Coordinates
chrLK031812:+:948756..949907
Molecular Weight (calculated)
25346.9 Da
IEP (calculated)
10.392
GRAVY (calculated)
-0.789
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHNNDNHH QHHLGVNKMG KNIRKEPSNQ QNQQQNPQAL VYNINKTDFR SIVQQLTGLG SASSVNPPQS TNSNPPKPPN SRLVKVRPAP LTQVNRPPPP
101: PPHPVQSNPM ASEPVQPINQ LSINPAESPI SAYMRYLIES SPVGNQPQPH DQNPVQPSTG LFPSQQTGPN PMLFQSPVSQ FVLSPTPRSP FPLLSPNFAF
201: SPRFLGSNES LPPPSPGFFF PLLSPLWKNQ
101: PPHPVQSNPM ASEPVQPINQ LSINPAESPI SAYMRYLIES SPVGNQPQPH DQNPVQPSTG LFPSQQTGPN PMLFQSPVSQ FVLSPTPRSP FPLLSPNFAF
201: SPRFLGSNES LPPPSPGFFF PLLSPLWKNQ
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
Arabidopsis Description
At5g46780 [Source:UniProtKB/TrEMBL;Acc:Q9FIP7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.