CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030098_P001	Maize	plastid	84.33	87.34
TraesCS1A01G194500.1	Wheat	cytosol	42.01	83.23
TraesCS1D01G198200.1	Wheat	cytosol	41.38	81.99
TraesCS1B01G209400.1	Wheat	cytosol	41.38	81.99
HORVU1Hr1G050850.1	Barley	plastid	69.28	71.99
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	57.05	52.3
VIT_02s0012g01280.t01	Wine grape	nucleus	46.4	51.75
KRH74422	Soybean	nucleus	46.4	46.54
KRH75619	Soybean	nucleus	41.69	46.02
KRH45443	Soybean	nucleus	42.01	45.89
GSMUA_Achr5P03460_001	Banana	nucleus	44.83	45.54
KRH45449	Soybean	nucleus	41.38	44.15
Bra024996.1-P	Field mustard	nucleus	31.03	43.42
CDY58504	Canola	nucleus	31.03	43.42
CDX77690	Canola	nucleus	31.03	43.04
GSMUA_Achr4P27300_001	Banana	cytosol	31.35	42.73
PGSC0003DMT400005396	Potato	nucleus	45.14	41.74
AT5G46780.1	Thale cress	nucleus	30.09	40.51
CDY37148	Canola	cytosol	28.21	39.82
CDX79596	Canola	nucleus	37.3	39.8
Bra022063.1-P	Field mustard	cytosol	28.53	39.57
Solyc06g061190.1.1	Tomato	nucleus	45.45	39.4
CDX84225	Canola	nucleus	41.38	38.37
PGSC0003DMT400092612	Potato	nucleus	44.51	38.27
CDY31674	Canola	nucleus	41.69	37.68
Bra017329.1-P	Field mustard	nucleus	39.5	36.84
KRH45444	Soybean	nucleus	41.07	36.29
OQU93090	Sorghum	plastid	27.9	36.03
AT1G32610.1	Thale cress	nucleus	31.03	34.02
Bra005358.1-P	Field mustard	nucleus	41.69	33.76
AT2G35230.1	Thale cress	nucleus	40.44	32.09
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	29.15	31.74
CDX84616	Canola	nucleus	38.56	30.22
Bra023004.1-P	Field mustard	nucleus	38.87	28.38

Protein Annotations

EnsemblPlants:EER91871	EnsemblPlantsGene:SORBI_3001G285000	EntrezGene:8055132	InterPro:VQ	PANTHER:PTHR33783	PANTHER:PTHR33783:SF2
PFAM:PF05678	ProteinID:EER91871	ProteinID:EER91871.1	RefSeq:XP_002464873.1	SEG:seg	unigene:Sbi.275
UniParc:UPI0001A82390	UniProt:C5WQP7	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55824296..55825255

Molecular Weight (calculated)

33650.1 Da

IEP (calculated)

12.339

GRAVY (calculated)

-0.707

Length

319 amino acids

Sequence
(BLAST)

001: MDRTTSNSGS SSTTTAASQN PHLGVNKLGR SIRKATPPPP QPQQQPAANR PPQPQPQVYN ISKNQFRDIV QQLTAGTPSP PPPQHHHQFA HRPPPPPPQS
101: QPKTPSMRLQ RIRPPPIATP VARPPPVHPN HHAVPHNPNH NNPVFHRPPP PQPQPQHMPA PGPAWADSPV SAYMRILENS LFSATPPGAA AAAAAAAAAA
201: AAGQGPPPPH PHHPQPSHPH PPPPPPVPSP GILPSPSGFL NLLSPTPRSP YPLLSPGFQH PPPLTPNFPA LSPLPGTGIL GPGPMPPPPS PGLWFPQSPS
301: GLLSPSGFLP ILSPRWRDI

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.