Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005396 | Potato | nucleus | 66.58 | 71.59 |
| KRH74422 | Soybean | nucleus | 55.8 | 65.09 |
| KRH75619 | Soybean | nucleus | 46.09 | 59.17 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 45.28 | 58.74 |
| KRH45443 | Soybean | nucleus | 45.01 | 57.19 |
| KRH45449 | Soybean | nucleus | 44.47 | 55.18 |
| CDX79596 | Canola | nucleus | 42.32 | 52.51 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 21.56 | 49.69 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 21.56 | 49.69 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 21.56 | 49.69 |
| Bra017329.1-P | Field mustard | nucleus | 43.94 | 47.66 |
| CDX84225 | Canola | nucleus | 43.67 | 47.09 |
| Zm00001d030098_P001 | Maize | plastid | 38.01 | 45.78 |
| AT1G32610.1 | Thale cress | nucleus | 35.58 | 45.36 |
| CDY31674 | Canola | nucleus | 42.86 | 45.04 |
| KRH45444 | Soybean | nucleus | 43.67 | 44.88 |
| EER91871 | Sorghum | plastid | 38.27 | 44.51 |
| HORVU1Hr1G050850.1 | Barley | plastid | 36.39 | 43.97 |
| AT2G35230.1 | Thale cress | nucleus | 46.36 | 42.79 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 35.85 | 42.36 |
| Bra005358.1-P | Field mustard | nucleus | 42.86 | 40.36 |
| CDX84616 | Canola | nucleus | 43.4 | 39.56 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 23.99 | 38.03 |
| Bra023004.1-P | Field mustard | nucleus | 43.67 | 37.07 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 30.73 | 32.76 |
| PGSC0003DMT400097756 | Potato | nucleus | 26.68 | 30.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092612 | EnsemblPlantsGene:PGSC0003DMG400042183 | EntrezGene:102597322 | InterPro:VQ | ncoils:Coil | PFAM:PF05678 |
| PGSC:PGSC0003DMG400042183 | RefSeq:XP_006352855.1 | SEG:seg | UniParc:UPI0002954B9A | UniProt:M1DQ63 | MapMan:35.1 |
Description
LRX2 [Source:PGSC_GENE;Acc:PGSC0003DMG400042183]
Coordinates
chr8:+:49631734..49632849
Molecular Weight (calculated)
40193.4 Da
IEP (calculated)
11.807
GRAVY (calculated)
-0.735
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNPDRPNNR SLDYLGVNKL GKNIKKSPIH QPNFNNANSA RQQAQPQVYN INKNDFRSIV QQLTGSPSQE PQPRPPHNPP KPPSMRLQRI RPPPLAPINR
101: PRIPMHPPAP MPAPSQLAGP APGVAYNNNF VRPPPQYGQP SPPMLPPINP GDVWANTAES PISAYMRYLQ NSIMDPGATQ TQLQGPAHTQ AYPPSSGFLP
201: NPSMPPLPSP RMNGPPPLPS PRMNGLPLLP SPRMNGPPLL PLPRTNGPPS LPPPRMNGPH PPFPSPRMNG PPPPLPSSGI NGPTFLPSPT SQFLLQSPTG
301: FFNMLSPRSP YPLLSPGVQR PSPLTPNFSF SHMAQPGILG PGPQFPPSPG FGFPLSPSGY FPITSPRWRD Q
101: PRIPMHPPAP MPAPSQLAGP APGVAYNNNF VRPPPQYGQP SPPMLPPINP GDVWANTAES PISAYMRYLQ NSIMDPGATQ TQLQGPAHTQ AYPPSSGFLP
201: NPSMPPLPSP RMNGPPPLPS PRMNGLPLLP SPRMNGPPLL PLPRTNGPPS LPPPRMNGPH PPFPSPRMNG PPPPLPSSGI NGPTFLPSPT SQFLLQSPTG
301: FFNMLSPRSP YPLLSPGVQR PSPLTPNFSF SHMAQPGILG PGPQFPPSPG FGFPLSPSGY FPITSPRWRD Q
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.