Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79596 | Canola | nucleus | 52.24 | 70.23 |
| CDX84225 | Canola | nucleus | 57.21 | 66.86 |
| Bra017329.1-P | Field mustard | nucleus | 56.72 | 66.67 |
| CDY31674 | Canola | nucleus | 56.97 | 64.87 |
| CDX84616 | Canola | nucleus | 59.45 | 58.72 |
| Bra005358.1-P | Field mustard | nucleus | 56.47 | 57.61 |
| Bra023004.1-P | Field mustard | nucleus | 62.44 | 57.44 |
| KRH74422 | Soybean | nucleus | 43.03 | 54.4 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 38.06 | 53.5 |
| AT1G32610.1 | Thale cress | nucleus | 37.56 | 51.89 |
| KRH45443 | Soybean | nucleus | 37.56 | 51.71 |
| KRH75619 | Soybean | nucleus | 36.07 | 50.17 |
| KRH45449 | Soybean | nucleus | 36.82 | 49.5 |
| PGSC0003DMT400005396 | Potato | nucleus | 41.79 | 48.7 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 18.91 | 47.2 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 18.91 | 47.2 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 18.91 | 47.2 |
| PGSC0003DMT400092612 | Potato | nucleus | 42.79 | 46.36 |
| Solyc06g061190.1.1 | Tomato | nucleus | 41.79 | 45.65 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 32.84 | 42.04 |
| AT5G46780.1 | Thale cress | nucleus | 24.63 | 41.77 |
| KRH45444 | Soybean | nucleus | 37.06 | 41.27 |
| HORVU1Hr1G050850.1 | Barley | plastid | 31.34 | 41.04 |
| EER91871 | Sorghum | plastid | 32.09 | 40.44 |
| Zm00001d030098_P001 | Maize | plastid | 30.6 | 39.94 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 20.9 | 35.9 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 24.13 | 27.87 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 21.14 | 27.33 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818090 | UniProt:A0A178VN96 | ProteinID:AAC61815.1 | ProteinID:AEC09083.1 | ProteinID:AEC09084.1 |
| EMBL:AK117327 | ProteinID:ANM62246.1 | ArrayExpress:AT2G35230 | EnsemblPlantsGene:AT2G35230 | RefSeq:AT2G35230 | TAIR:AT2G35230 |
| RefSeq:AT2G35230-TAIR-G | EnsemblPlants:AT2G35230.1 | TAIR:AT2G35230.1 | Unigene:At.37693 | EMBL:BT009652 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009960 | GO:GO:0040007 |
| GO:GO:0043078 | GO:GO:0080113 | Symbol:IKU1 | RefSeq:NP_001324419.1 | RefSeq:NP_181066.1 | RefSeq:NP_973604.1 |
| UniProt:O82170 | ProteinID:OAP07809.1 | PFAM:PF05678 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000198 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0007633 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009089 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020090 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | UniParc:UPI00000AC239 | InterPro:VQ | SEG:seg |
Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
Coordinates
chr2:+:14842291..14844465
Molecular Weight (calculated)
44688.8 Da
IEP (calculated)
10.617
GRAVY (calculated)
-1.014
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.