Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31674 | Canola | nucleus | 90.99 | 88.67 |
| CDX79596 | Canola | nucleus | 61.92 | 71.24 |
| CDX84616 | Canola | nucleus | 68.02 | 57.49 |
| AT2G35230.1 | Thale cress | nucleus | 66.86 | 57.21 |
| KRH74422 | Soybean | nucleus | 49.71 | 53.77 |
| KRH75619 | Soybean | nucleus | 43.31 | 51.56 |
| KRH45443 | Soybean | nucleus | 43.02 | 50.68 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 41.86 | 50.35 |
| KRH45449 | Soybean | nucleus | 42.44 | 48.83 |
| PGSC0003DMT400005396 | Potato | nucleus | 48.26 | 48.12 |
| Solyc06g061190.1.1 | Tomato | nucleus | 49.13 | 45.92 |
| CDX77690 | Canola | nucleus | 30.52 | 45.65 |
| CDY58504 | Canola | nucleus | 30.23 | 45.61 |
| PGSC0003DMT400092612 | Potato | nucleus | 47.09 | 43.67 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 20.35 | 43.48 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 20.35 | 43.48 |
| CDY37148 | Canola | cytosol | 28.49 | 43.36 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 20.06 | 42.86 |
| EER91871 | Sorghum | plastid | 38.37 | 41.38 |
| Zm00001d030098_P001 | Maize | plastid | 36.63 | 40.91 |
| KRH45444 | Soybean | nucleus | 42.15 | 40.17 |
| HORVU1Hr1G050850.1 | Barley | plastid | 34.88 | 39.09 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 35.17 | 38.53 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 24.42 | 35.9 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 28.49 | 33.45 |
| CDX87454 | Canola | nucleus, plastid | 21.51 | 28.79 |
| CDY26860 | Canola | nucleus, plastid | 23.84 | 28.37 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 28.2 | 27.87 |
| CDY14617 | Canola | nucleus, plastid | 23.26 | 27.4 |
| CDX79256 | Canola | nucleus, plastid | 19.77 | 27.2 |
| CDX88437 | Canola | nucleus, plastid | 19.48 | 27.13 |
Protein Annotations
| EnsemblPlants:CDX84225 | EnsemblPlantsGene:GSBRNA2T00141279001 | InterPro:VQ | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 | PFAM:PF05678 |
| ProteinID:CDX84225 | ProteinID:CDX84225.1 | SEG:seg | UniParc:UPI0004EEBB0E | MapMan:35.1 | : |
Description
BnaC04g09870D
Coordinates
chrLK031836:-:829871..831485
Molecular Weight (calculated)
37471.4 Da
IEP (calculated)
10.573
GRAVY (calculated)
-0.929
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPRQNDHL GVNKIGKNIR KSPLHQPNFG QPQVYNISKT DFRSMVQQLT GSPSRESLPR PPPQNSSPKP QSTRLQRIRP PPLTQINQPA VPHPTMAPLQ
101: HHPHGYVSGP PPQPRLLQGT QQHQQQPMMG QGDQFWSNTA ESPISGYMRY LQSSLGDAAP SGNQMQPAQP QSQPQPYMPA QAQPQAQPHM MPGSQPHMNM
201: QGPLPPPGLV PSPAPRNLPS QPQFNGPVPG TPTLPSPRFN QMYGGFPSPR YNGFGPLNSP TSQFAPPSPT GYPNMFSPRS PYPLLSPGVQ YPQPLTPNFS
301: FSQLAQSENQ GPGAGTGHPQ PPPSPGLMYP LSPGFFPSPR WGNY
101: HHPHGYVSGP PPQPRLLQGT QQHQQQPMMG QGDQFWSNTA ESPISGYMRY LQSSLGDAAP SGNQMQPAQP QSQPQPYMPA QAQPQAQPHM MPGSQPHMNM
201: QGPLPPPGLV PSPAPRNLPS QPQFNGPVPG TPTLPSPRFN QMYGGFPSPR YNGFGPLNSP TSQFAPPSPT GYPNMFSPRS PYPLLSPGVQ YPQPLTPNFS
301: FSQLAQSENQ GPGAGTGHPQ PPPSPGLMYP LSPGFFPSPR WGNY
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.