CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88437	Canola	nucleus, plastid	80.16	83.4
Bra035028.1-P	Field mustard	nucleus, plastid	81.32	71.09
CDY26860	Canola	nucleus, plastid	61.87	55.02
CDY14617	Canola	nucleus, plastid	58.75	51.71
AT1G78310.1	Thale cress	nucleus, plastid	61.09	50.48
CDX79256	Canola	nucleus, plastid	47.47	48.8
KRH16774	Soybean	plastid	18.68	40.34
KRH53024	Soybean	plastid	42.8	37.29
PGSC0003DMT400097756	Potato	nucleus	43.58	34.89
Solyc04g074520.1.1	Tomato	nucleus	43.19	34.37
KRH62312	Soybean	nucleus	38.13	34.15
VIT_18s0001g06350.t01	Wine grape	nucleus	43.58	33.43
KRH72387	Soybean	nucleus	27.24	33.02
CDX77690	Canola	nucleus	25.29	28.26
Os03t0190000-01	Rice	plastid	27.24	28.23
CDY58504	Canola	nucleus	24.9	28.07
OQU93090	Sorghum	plastid	26.46	27.53
Zm00001d027998_P001	Maize	plastid	26.07	27.35
Zm00001d048224_P001	Maize	plastid	24.12	26.27
CDY37148	Canola	cytosol	22.57	25.66
GSMUA_Achr8P18110_001	Banana	plastid	25.29	25.49
CDX84225	Canola	nucleus	28.79	21.51
CDX79596	Canola	nucleus	24.9	21.4
HORVU4Hr1G078500.2	Barley	plastid	24.9	21.12
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	23.35	20.48
CDY31674	Canola	nucleus	27.63	20.11
CDX84616	Canola	nucleus	26.46	16.71

Protein Annotations

EnsemblPlants:CDX87454	EnsemblPlantsGene:GSBRNA2T00146434001	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1	ProteinID:CDX87454	ProteinID:CDX87454.1
SEG:seg	UniParc:UPI0004EE5F1F	MapMan:35.1	:	:	:

Description

BnaA07g34190D

Coordinates

chrLK031850:+:700538..701597

Molecular Weight (calculated)

27312.3 Da

IEP (calculated)

10.699

GRAVY (calculated)

-0.617

Length

257 amino acids

Sequence
(BLAST)

001: MDKSCNSSGD SASVTSSTGN NHHLRQLNKL SHKISKPTTT STSSSSISAA VNQETDHQFP PPPPPPQQQP QHQINHGNLH QHQPPSSRLH RIRPPPLAHV
101: INRPPGLLNN AALVPPPSWS GGFVVPRPTA PLSPLPPLPP VHAAAESPVS SYMRYLQNSM LAMDSNRREF SGLSPLAPLV SPRWYQQQQE NAPPPLNSGR
201: PPPPGTVSQA PPQSLGCLSS PKSPYGLLSP SLLLSPTSGQ LGFPASPTTV PPLPSPK

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.