CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027998_P001	Maize	plastid	72.87	73.47
Os03t0190000-01	Rice	plastid	68.42	68.15
Zm00001d048224_P001	Maize	plastid	63.97	66.95
HORVU4Hr1G078500.2	Barley	plastid	57.89	47.19
GSMUA_Achr8P18110_001	Banana	plastid	48.58	47.06
KRH16774	Soybean	plastid	21.86	45.38
KRH72387	Soybean	nucleus	32.39	37.74
KRH62312	Soybean	nucleus	38.87	33.45
Bra008356.1-P	Field mustard	nucleus, plastid	38.87	33.22
CDY26860	Canola	nucleus, plastid	38.87	33.22
CDX79256	Canola	nucleus, plastid	33.6	33.2
Bra035028.1-P	Field mustard	nucleus, plastid	38.46	32.31
KRH53024	Soybean	plastid	38.46	32.2
CDY14617	Canola	nucleus, plastid	38.06	32.19
PGSC0003DMT400097756	Potato	nucleus	41.3	31.78
Solyc04g074520.1.1	Tomato	nucleus	39.68	30.34
AT1G78310.1	Thale cress	nucleus, plastid	37.65	29.9
VIT_18s0001g06350.t01	Wine grape	nucleus	39.27	28.96
EER91871	Sorghum	plastid	36.03	27.9
CDX88437	Canola	nucleus, plastid	27.53	27.53
CDX87454	Canola	nucleus, plastid	27.53	26.46

Protein Annotations

MapMan:35.2	UniProt:A0A1Z5SAZ3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006883	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0019725	GO:GO:0030007	GO:GO:0043433	GO:GO:1901001
EnsemblPlants:OQU93090	ProteinID:OQU93090	ProteinID:OQU93090.1	PFAM:PF05678	PANTHER:PTHR33783	PANTHER:PTHR33783:SF1
EnsemblPlantsGene:SORBI_3001G475701	UniParc:UPI000B8BA3B3	InterPro:VQ	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:74796033..74796776

Molecular Weight (calculated)

25530.4 Da

IEP (calculated)

11.861

GRAVY (calculated)

-0.443

Length

247 amino acids

Sequence
(BLAST)

001: MVMDKSQPPP PPPPSSSLKS LNKASYKISK PSSSTSVSSA PAPAPTMRAP SPPPAAPRPP APLPPPQASS VPADHPPPQP PVYNIDKSNF RDVVQKLTGS
101: PSHLLPPQPA AAPAPARAPL MAPPPPPPLM APPQPPPPPP PPHIMAPPPP TAIPSRLHRI RPPPLAPPRP PPILPPAPPA LSPLPPLPAV CMTAESPISA
201: YMRRLRGMPS PIHVPTSPLG FGCLPSPRTP PSPGVPMPAT SPRVRDP

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.