Factsheet for PGSC0003DMT400097756

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074520.1.1	Tomato	nucleus	89.72	89.16
KRH16774	Soybean	plastid	19.94	53.78
KRH62312	Soybean	nucleus	46.11	51.57
CDY14617	Canola	nucleus, plastid	46.73	51.37
Bra035028.1-P	Field mustard	nucleus, plastid	46.73	51.02
KRH53024	Soybean	plastid	46.73	50.85
Bra008356.1-P	Field mustard	nucleus, plastid	45.48	50.52
CDY26860	Canola	nucleus, plastid	45.48	50.52
VIT_18s0001g06350.t01	Wine grape	nucleus	52.34	50.15
AT1G78310.1	Thale cress	nucleus, plastid	47.98	49.52
KRH72387	Soybean	nucleus	30.53	46.23
CDX79256	Canola	nucleus, plastid	35.2	45.2
CDX88437	Canola	nucleus, plastid	33.64	43.72
CDX87454	Canola	nucleus, plastid	34.89	43.58
Os03t0190000-01	Rice	plastid	32.4	41.94
Zm00001d027998_P001	Maize	plastid	31.78	41.63
OQU93090	Sorghum	plastid	31.78	41.3
Zm00001d048224_P001	Maize	plastid	29.59	40.25
GSMUA_Achr8P18110_001	Banana	plastid	28.97	36.47
HORVU4Hr1G078500.2	Barley	plastid	29.28	31.02
PGSC0003DMT400005396	Potato	nucleus	30.84	28.7
PGSC0003DMT400092612	Potato	nucleus	30.84	26.68

Protein Annotations

EntrezGene:102583040	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006883	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0019725	GO:GO:0030007	GO:GO:0043433	GO:GO:1901001
UniProt:M1E1C4	PFAM:PF05678	EnsemblPlantsGene:PGSC0003DMG400047327	PGSC:PGSC0003DMG400047327	EnsemblPlants:PGSC0003DMT400097756	PANTHER:PTHR33783
PANTHER:PTHR33783:SF1	UniParc:UPI000295A179	InterPro:VQ	RefSeq:XP_006363283.1	RefSeq:XP_015158855.1	RefSeq:XP_015158856.1
SEG:seg	:	:	:	:	:

Description

Structural constituent of cell wall [Source:PGSC_GENE;Acc:PGSC0003DMG400047327]

Coordinates

chr4:-:64029228..64030193

Molecular Weight (calculated)

34273.7 Da

IEP (calculated)

11.081

GRAVY (calculated)

-0.603

Length

321 amino acids

Sequence
(BLAST)

001: MDKSCNSSGE GDSTATSASS SSSGNRDMYL KHLNKISHKI SKPIRKPAFF ENQNPPQAQA QTQHAPPPLP PPPPPAGPQN LHPQPQQQPP VYNINKSDFR
101: DVVQKLTGSP AHERISTPPP IQQPKAASSR LQRIRPPPLA QISNRPPPFV NGSNNAVAGG GFVGGQRPVQ AQPLSPLPPF PAVHASAESP ISAYMRFLQS
201: SIASASTDSD SKRFSTGLSP LAPRWNNFGA PQQQPPFPPP QPLPLPHQQN IPPPPTNSSF VLPPFPAFPS SPLPFGCLPS PRSPYGLLSP GLLLSPSRQL
301: GFQQLPLSPT LPVASPKWKG I

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.