CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53024	Soybean	plastid	79.79	77.63
KRH16774	Soybean	plastid	23.0	55.46
KRH72387	Soybean	nucleus	37.63	50.94
VIT_18s0001g06350.t01	Wine grape	nucleus	55.4	47.46
Bra008356.1-P	Field mustard	nucleus, plastid	47.39	47.06
CDY26860	Canola	nucleus, plastid	47.39	47.06
Solyc04g074520.1.1	Tomato	nucleus	52.61	46.75
CDY14617	Canola	nucleus, plastid	47.04	46.23
PGSC0003DMT400097756	Potato	nucleus	51.57	46.11
AT1G78310.1	Thale cress	nucleus, plastid	49.48	45.66
Bra035028.1-P	Field mustard	nucleus, plastid	44.95	43.88
CDX79256	Canola	nucleus, plastid	37.28	42.8
CDX88437	Canola	nucleus, plastid	34.15	39.68
Zm00001d048224_P001	Maize	plastid	32.06	38.98
OQU93090	Sorghum	plastid	33.45	38.87
Zm00001d027998_P001	Maize	plastid	33.1	38.78
Os03t0190000-01	Rice	plastid	33.1	38.31
CDX87454	Canola	nucleus, plastid	34.15	38.13
GSMUA_Achr8P18110_001	Banana	plastid	33.45	37.65
KRH45443	Soybean	nucleus	33.1	32.53
KRH74422	Soybean	nucleus	35.19	31.76
KRH45449	Soybean	nucleus	32.75	31.44
KRH75619	Soybean	nucleus	31.36	31.14
HORVU4Hr1G078500.2	Barley	plastid	30.31	28.71
KRH45444	Soybean	nucleus	33.1	26.32

Protein Annotations

EMBL:ACUP02002234	EnsemblPlants:KRH62312	EnsemblPlantsGene:GLYMA_04G099600	EntrezGene:100777442	InterPro:VQ	PANTHER:PTHR33783
PANTHER:PTHR33783:SF1	PFAM:PF05678	ProteinID:KRH62312	ProteinID:KRH62312.1	SEG:seg	UniParc:UPI000233A0B9
UniProt:I1JVB8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:9115245..9116947

Molecular Weight (calculated)

31435.4 Da

IEP (calculated)

10.725

GRAVY (calculated)

-0.683

Length

287 amino acids

Sequence
(BLAST)

001: MDKSCDPSAD STSTSLPANP NNNSRDQYLR HLNKLSQKIS KPLIKKPTFD PPQAQAQAPN PNNQVQAQQN LQHQPPVYNI NKNDFRDVVQ KLTGSPAHDR
101: ISTPPPIQPP KPPSSRLQRI RPPPLPQITN RPPPLLNPTT LPRPQLPNAV TFNNFSVFSR PPAPLSPLPP FPTVHAPAES PISAYMRDLQ TLVDSNARHF
201: SGFSPFPPPP QPQQEQQQQQ AMLPSQAPSS FQLPSSPVPF GCLNSQLASY PLLSPGLLFS PTSGQLGFPQ LPLSPTVPVP SPRWKGI

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.