CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62312	Soybean	nucleus	77.63	79.79
KRH16774	Soybean	plastid	21.69	53.78
Bra008356.1-P	Field mustard	nucleus, plastid	47.46	48.44
CDY26860	Canola	nucleus, plastid	47.46	48.44
VIT_18s0001g06350.t01	Wine grape	nucleus	54.58	48.06
KRH72387	Soybean	nucleus	34.24	47.64
Bra035028.1-P	Field mustard	nucleus, plastid	47.46	47.62
AT1G78310.1	Thale cress	nucleus, plastid	49.83	47.27
CDY14617	Canola	nucleus, plastid	46.78	47.26
Solyc04g074520.1.1	Tomato	nucleus	51.19	46.75
PGSC0003DMT400097756	Potato	nucleus	50.85	46.73
CDX79256	Canola	nucleus, plastid	37.97	44.8
CDX87454	Canola	nucleus, plastid	37.29	42.8
CDX88437	Canola	nucleus, plastid	35.59	42.51
Zm00001d048224_P001	Maize	plastid	30.85	38.56
OQU93090	Sorghum	plastid	32.2	38.46
Zm00001d027998_P001	Maize	plastid	31.86	38.37
Os03t0190000-01	Rice	plastid	31.86	37.9
GSMUA_Achr8P18110_001	Banana	plastid	30.85	35.69
KRH45443	Soybean	nucleus	31.86	32.19
KRH74422	Soybean	nucleus	33.56	31.13
KRH45449	Soybean	nucleus	31.53	31.1
KRH75619	Soybean	nucleus	29.83	30.45
HORVU4Hr1G078500.2	Barley	plastid	29.15	28.38
KRH45444	Soybean	nucleus	31.53	25.76

Protein Annotations

EMBL:ACUP02003444	EnsemblPlants:KRH53024	EnsemblPlantsGene:GLYMA_06G101400	EntrezGene:100808478	InterPro:VQ	PANTHER:PTHR33783
PANTHER:PTHR33783:SF1	PFAM:PF05678	ProteinID:KRH53024	ProteinID:KRH53024.1	SEG:seg	UniParc:UPI000233A78A
UniProt:I1K9V6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:8043143..8044571

Molecular Weight (calculated)

32312.6 Da

IEP (calculated)

10.917

GRAVY (calculated)

-0.693

Length

295 amino acids

Sequence
(BLAST)

001: MDKSCHPSSN TSISTSSAAN PNNNSRDQYL RHLNKLSQKI SKPIIKKPVF DPPQAQVPNN QVQHQPPVYN INKNDFRDVV QKLTGSPAHD RISTPPPIQP
101: PKPPSSRLQR IRPPPLPQIT NRPPPLLNPT TLPRPQQLPN AVTFNNNFSV FSRPPAPLSP LPPFPTVHAP AESPISAYMR DLQTLVDANA KHFSGFSPLP
201: PPPLVQPQPQ PQPQPQPQQE QQPQQQQQGM VPSQAPSSFQ MPSSPVPFGC LNSQLASYPL LSPGLLFSPT SGQLGFPQLP LSPTVPVPSP RWKGI

Best Arabidopsis Sequence Match ( AT1G78310.1 )
(BLAST)

001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H

Arabidopsis Description

VQ9VQ motif-containing protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.