CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023004.1-P	Field mustard	nucleus	97.54	90.85
CDX79596	Canola	nucleus	64.86	88.29
CDX84225	Canola	nucleus	57.49	68.02
CDY31674	Canola	nucleus	55.77	64.31
AT2G35230.1	Thale cress	nucleus	58.72	59.45
KRH74422	Soybean	nucleus	40.05	51.26
VIT_02s0012g01280.t01	Wine grape	nucleus	35.38	50.35
KRH45443	Soybean	nucleus	34.64	48.29
KRH75619	Soybean	nucleus	33.91	47.75
KRH45449	Soybean	nucleus	34.15	46.49
PGSC0003DMT400005396	Potato	nucleus	37.59	44.35
PGSC0003DMT400092612	Potato	nucleus	39.56	43.4
CDY58504	Canola	nucleus	24.08	42.98
CDX77690	Canola	nucleus	24.08	42.61
CDY37148	Canola	cytosol	23.34	42.04
Solyc06g061190.1.1	Tomato	nucleus	37.59	41.58
TraesCS1A01G194500.1	Wheat	cytosol	15.97	40.37
TraesCS1B01G209400.1	Wheat	cytosol	15.97	40.37
TraesCS1D01G198200.1	Wheat	cytosol	15.97	40.37
KRH45444	Soybean	nucleus	34.64	39.06
EER91871	Sorghum	plastid	30.22	38.56
Zm00001d030098_P001	Maize	plastid	28.75	37.99
GSMUA_Achr5P03460_001	Banana	nucleus	29.24	37.9
HORVU1Hr1G050850.1	Barley	plastid	27.03	35.83
GSMUA_Achr4P27300_001	Banana	cytosol	18.92	32.91
CDX87678	Canola	endoplasmic reticulum, extracellular, plastid	23.1	32.08
CDY14617	Canola	nucleus, plastid	19.9	27.74
CDY26860	Canola	nucleus, plastid	19.16	26.99
CDX87454	Canola	nucleus, plastid	16.71	26.46
CDX79256	Canola	nucleus, plastid	15.72	25.6
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	21.62	25.29
CDX88437	Canola	nucleus, plastid	15.23	25.1

Protein Annotations

EnsemblPlants:CDX84616	EnsemblPlantsGene:GSBRNA2T00141884001	InterPro:VQ	PANTHER:PTHR33783	PFAM:PF05678	ProteinID:CDX84616
ProteinID:CDX84616.1	SEG:seg	UniParc:UPI0004EDE013	MapMan:35.1	:	:

Description

BnaA03g16140D

Coordinates

chrLK031838:-:389584..390897

Molecular Weight (calculated)

44788.9 Da

IEP (calculated)

9.486

GRAVY (calculated)

-0.927

Length

407 amino acids

Sequence
(BLAST)

001: MDRPRQNDHL GVNKIGKNIR KSPLTQPSVA AHANLAAEAA RPQAQPQVYN INRSDFRSIV QQLTGSPSRE SLPGPPQNNS PKPQNTRLQR IRPPPLMQIN
101: QPGAPLHHHH PHSLMGPPPP QWHMPQVAQQ QQQQPMMGQG DQFWSNTTES PLSGYMRYLQ SPLGDAGSSG NHMQPPGHEH QPYMPAHEQP PYMLAQPQPQ
201: SQHQPYMPGH ENRPYMPAQA QFRPQQYMPA QPHSQPQQYM PAQPQIQPDP YMMHGSQPQM NMQGPLQPSQ YPPPPGLVPN LPPPQFNGSV PVTSTLPSPS
301: FNQMYNGFHS LQNNGFGSLQ SPTSQFSMPS PTYPNMLSPR SPNPLLSPGV QYPQPLTPNF SFSQLAQSGS SGPGDGPGLP QPPPSPGLVF PLSPGLFPVP
401: SPSWGDY

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.