Factsheet for Bra023004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84616	Canola	nucleus	90.85	97.54
Bra017329.1-P	Field mustard	nucleus	48.97	62.57
AT2G35230.1	Thale cress	nucleus	57.44	62.44
Bra005358.1-P	Field mustard	nucleus	52.63	58.38
KRH74422	Soybean	nucleus	37.53	51.57
VIT_02s0012g01280.t01	Wine grape	nucleus	32.95	50.35
KRH45443	Soybean	nucleus	32.49	48.63
KRH75619	Soybean	nucleus	31.58	47.75
KRH45449	Soybean	nucleus	32.04	46.82
PGSC0003DMT400005396	Potato	nucleus	35.24	44.64
PGSC0003DMT400092612	Potato	nucleus	37.07	43.67
Bra024996.1-P	Field mustard	nucleus	22.2	42.54
Solyc06g061190.1.1	Tomato	nucleus	35.24	41.85
Bra022063.1-P	Field mustard	cytosol	21.97	41.74
TraesCS1A01G194500.1	Wheat	cytosol	15.1	40.99
TraesCS1B01G209400.1	Wheat	cytosol	15.1	40.99
TraesCS1D01G198200.1	Wheat	cytosol	15.1	40.99
KRH45444	Soybean	nucleus	32.49	39.34
EER91871	Sorghum	plastid	28.38	38.87
Zm00001d030098_P001	Maize	plastid	27.0	38.31
GSMUA_Achr5P03460_001	Banana	nucleus	27.46	38.22
HORVU1Hr1G050850.1	Barley	plastid	25.4	36.16
GSMUA_Achr4P27300_001	Banana	cytosol	17.85	33.33
Bra035028.1-P	Field mustard	nucleus, plastid	19.22	28.57
Bra008356.1-P	Field mustard	nucleus, plastid	18.08	27.34
Os10t0577200-01	Rice	cytosol, mitochondrion, plastid	20.37	25.57

Protein Annotations

EnsemblPlants:Bra023004.1	EnsemblPlants:Bra023004.1-P	EnsemblPlantsGene:Bra023004	InterPro:VQ	PFAM:PF05678	SEG:seg
UniParc:UPI000253FE23	UniProt:M4E2K3	MapMan:35.1	:	:	:

Description

AT2G35230 (E=1e-085) | VQ motif-containing protein

Coordinates

chrA03:+:8183295..8184608

Molecular Weight (calculated)

48104.8 Da

IEP (calculated)

8.775

GRAVY (calculated)

-0.973

Length

437 amino acids

Sequence
(BLAST)

001: MDRPRQNDHL GVNKIGKNIR KSPLTQPSVA AHANLAAEAA RPQAQPQVYN INRSDFRSIV QQLTGSPSRE SLPGPPQNNS PKPQNTRLQR IRPPPLMQIN
101: QPGAPLHHHH PHSLMGPPPP QWHMPQVTQQ QQQQPMMGQG DQFWSNTTES PLSGYMRYLQ SPLGDAGSSG NHMQPPGHEH GPYMPAHEQP PYMLAQPQPQ
201: SQHQPYMPGH ENRPYMPAQA QFQPRQYMPG HEHGPYMPAQ PQSQPQPYMP CHENGPYMPA QPHSQPQQYM PAQPQTQPDP YMMHGSQPQM NMQGPLQPSQ
301: YPPPPGLVPN LPPPQFNGPV PVTSTLPSPS FNQMYNGFHS LQNNGFGSLQ SPTSQFGMPS PTYPNMLSPR SPNPLLSPGV QYPQPLTPNF SFSQLAQSGS
401: SGPGDGPGLP QPPPSPGLVF PLSPGLFPVP SPSWGDY

Best Arabidopsis Sequence Match ( AT2G35230.3 )
(BLAST)

001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY

Arabidopsis Description

IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.