Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31674 | Canola | nucleus | 87.56 | 97.73 |
| Bra017329.1-P | Field mustard | nucleus | 52.28 | 60.23 |
| AT2G35230.1 | Thale cress | nucleus | 57.61 | 56.47 |
| Bra023004.1-P | Field mustard | nucleus | 58.38 | 52.63 |
| KRH74422 | Soybean | nucleus | 42.39 | 52.52 |
| KRH75619 | Soybean | nucleus | 38.07 | 51.9 |
| KRH45443 | Soybean | nucleus | 37.56 | 50.68 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 36.29 | 50.0 |
| KRH45449 | Soybean | nucleus | 37.06 | 48.83 |
| PGSC0003DMT400005396 | Potato | nucleus | 40.86 | 46.67 |
| Bra024996.1-P | Field mustard | nucleus | 25.89 | 44.74 |
| Solyc06g061190.1.1 | Tomato | nucleus | 41.62 | 44.57 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 17.77 | 43.48 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 17.77 | 43.48 |
| PGSC0003DMT400092612 | Potato | nucleus | 40.36 | 42.86 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 17.51 | 42.86 |
| Bra022063.1-P | Field mustard | cytosol | 24.62 | 42.17 |
| EER91871 | Sorghum | plastid | 33.76 | 41.69 |
| Zm00001d030098_P001 | Maize | plastid | 31.98 | 40.91 |
| KRH45444 | Soybean | nucleus | 36.8 | 40.17 |
| HORVU1Hr1G050850.1 | Barley | plastid | 29.95 | 38.44 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 30.2 | 37.9 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 21.07 | 35.47 |
| Bra035028.1-P | Field mustard | nucleus, plastid | 21.83 | 29.25 |
| Bra008356.1-P | Field mustard | nucleus, plastid | 20.81 | 28.37 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 24.62 | 27.87 |
Protein Annotations
Description
AT2G35230 (E=6e-101) | VQ motif-containing protein
Coordinates
chrA05:-:5012814..5014478
Molecular Weight (calculated)
43137.0 Da
IEP (calculated)
10.353
GRAVY (calculated)
-0.988
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPRQNDHL GVNKIGKNIR KSPLHQPNFG ANANAARPQG QPQVYNISKT DFRSMVQQLT GSPARESLPR PPPQNSSPKP QSTRLQRIRP PPVTQINQPA
101: APVQHYPHGY ASGPPPQPRL LQGTQQLQQQ PMMGHGDQFW SNTAESPISG YMRYLQSSLG DAAPSGNQMQ PGYEHRPYMP PAQEHRPYMP PAQEHRPYMP
201: PAQEHRPYMP AQEHRPYMPA QPQPYMAPQA QTQPQAQPHM MPGSQPHMNM QGPLPPPGLV PSPAPRNLPS QPQFNGPVPG TPTLPSPRFN QMYGGFPSPR
301: SNGFGPLNSP TSQFAPPSPS GYPNMFSPRS SYPLLSPGVQ YPQPLTPNFS FSQLSQSGNQ GPGAGTGPPQ PPPSPGLIYP LSPGFFPSPR WGNY
101: APVQHYPHGY ASGPPPQPRL LQGTQQLQQQ PMMGHGDQFW SNTAESPISG YMRYLQSSLG DAAPSGNQMQ PGYEHRPYMP PAQEHRPYMP PAQEHRPYMP
201: PAQEHRPYMP AQEHRPYMPA QPQPYMAPQA QTQPQAQPHM MPGSQPHMNM QGPLPPPGLV PSPAPRNLPS QPQFNGPVPG TPTLPSPRFN QMYGGFPSPR
301: SNGFGPLNSP TSQFAPPSPS GYPNMFSPRS SYPLLSPGVQ YPQPLTPNFS FSQLSQSGNQ GPGAGTGPPQ PPPSPGLIYP LSPGFFPSPR WGNY
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.