Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P27300_001 | Banana | cytosol | 39.81 | 53.42 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 24.84 | 48.45 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 24.52 | 47.83 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 24.52 | 47.83 |
| HORVU1Hr1G050850.1 | Barley | plastid | 44.9 | 45.93 |
| EER91871 | Sorghum | plastid | 45.54 | 44.83 |
| Zm00001d030098_P001 | Maize | plastid | 43.95 | 44.81 |
| VIT_02s0012g01280.t01 | Wine grape | nucleus | 40.76 | 44.76 |
| KRH45443 | Soybean | nucleus | 39.49 | 42.47 |
| KRH74422 | Soybean | nucleus | 42.99 | 42.45 |
| KRH75619 | Soybean | nucleus | 38.53 | 41.87 |
| KRH45449 | Soybean | nucleus | 38.85 | 40.8 |
| CDX77690 | Canola | nucleus | 29.3 | 40.0 |
| CDY58504 | Canola | nucleus | 28.66 | 39.47 |
| PGSC0003DMT400005396 | Potato | nucleus | 42.36 | 38.55 |
| Bra024996.1-P | Field mustard | nucleus | 27.71 | 38.16 |
| CDX79596 | Canola | nucleus | 35.99 | 37.79 |
| AT5G46780.1 | Thale cress | nucleus | 28.34 | 37.55 |
| CDY37148 | Canola | cytosol | 26.11 | 36.28 |
| Bra017329.1-P | Field mustard | nucleus | 39.17 | 35.96 |
| PGSC0003DMT400092612 | Potato | nucleus | 42.36 | 35.85 |
| Bra022063.1-P | Field mustard | cytosol | 26.11 | 35.65 |
| CDX84225 | Canola | nucleus | 38.53 | 35.17 |
| Solyc06g061190.1.1 | Tomato | nucleus | 41.08 | 35.05 |
| KRH45444 | Soybean | nucleus | 39.17 | 34.07 |
| CDY31674 | Canola | nucleus | 38.22 | 33.99 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 37.26 | 33.62 |
| AT1G32610.1 | Thale cress | nucleus | 30.89 | 33.33 |
| AT2G35230.1 | Thale cress | nucleus | 42.04 | 32.84 |
| Bra005358.1-P | Field mustard | nucleus | 37.9 | 30.2 |
| CDX84616 | Canola | nucleus | 37.9 | 29.24 |
| GSMUA_Achr8P18110_001 | Banana | plastid | 22.93 | 28.24 |
| Bra023004.1-P | Field mustard | nucleus | 38.22 | 27.46 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 25.48 | 27.3 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P03460_001 | EnsemblPlants:GSMUA_Achr5T03460_001 | EnsemblPlantsGene:GSMUA_Achr5G03460_001 | InterPro:VQ | PANTHER:PTHR33783 | PANTHER:PTHR33783:SF2 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000295E9FB | UniProt:M0SVC5 | MapMan:35.2 | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03460_001]
Coordinates
chr5:+:2377062..2378006
Molecular Weight (calculated)
34499.1 Da
IEP (calculated)
10.835
GRAVY (calculated)
-0.771
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRWGNNHHH EQQRQQHLRV NELSKNIRKT LPHHPTCYYS DQKPPQQQQK PQPQVYNISK KDFRSIVQQL TGTPSRDSSP VPNPHPHPHP RPRPSSTRLQ
101: KIRPPPLAAI PRPPPPSLTA AAARLPPPYY PPIPYQSPSF NLPPAPVPHP NWDPSSFPRP FISAGAAGPA WAESPVSTYM RYLESSLVSS DTSRQPHQPP
201: LPSPGLLPPL PLPSPRTTAR LPPPPTTPSA SALPSPSTFL NMLSPKSPYP LMSPGFQYPP PLTPNFALSP LGQSEMWGAG PGPGPRPPPS PGLWFPPSPS
301: GFLPILSPGW RDML
101: KIRPPPLAAI PRPPPPSLTA AAARLPPPYY PPIPYQSPSF NLPPAPVPHP NWDPSSFPRP FISAGAAGPA WAESPVSTYM RYLESSLVSS DTSRQPHQPP
201: LPSPGLLPPL PLPSPRTTAR LPPPPTTPSA SALPSPSTFL NMLSPKSPYP LMSPGFQYPP PLTPNFALSP LGQSEMWGAG PGPGPRPPPS PGLWFPPSPS
301: GFLPILSPGW RDML
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
Arabidopsis Description
IKU1IKU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VN96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.