Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024996.1-P | Field mustard | nucleus | 75.95 | 78.95 |
| CDY58504 | Canola | nucleus | 75.95 | 78.95 |
| Bra022063.1-P | Field mustard | cytosol | 76.37 | 78.7 |
| CDX77690 | Canola | nucleus | 75.53 | 77.83 |
| CDY37148 | Canola | cytosol | 73.0 | 76.55 |
| CDX87678 | Canola | endoplasmic reticulum, extracellular, plastid | 74.26 | 60.07 |
| GSMUA_Achr4P27300_001 | Banana | cytosol | 30.38 | 30.77 |
| TraesCS1D01G198200.1 | Wheat | cytosol | 20.68 | 30.43 |
| TraesCS1B01G209400.1 | Wheat | cytosol | 20.68 | 30.43 |
| HORVU1Hr1G050850.1 | Barley | plastid | 39.24 | 30.29 |
| Zm00001d030098_P001 | Maize | plastid | 39.24 | 30.19 |
| EER91871 | Sorghum | plastid | 40.51 | 30.09 |
| TraesCS1A01G194500.1 | Wheat | cytosol | 20.25 | 29.81 |
| GSMUA_Achr5P03460_001 | Banana | nucleus | 37.55 | 28.34 |
| AT1G32610.1 | Thale cress | nucleus | 31.22 | 25.43 |
| AT1G78310.1 | Thale cress | nucleus, plastid | 32.91 | 25.08 |
| AT2G35230.1 | Thale cress | nucleus | 41.77 | 24.63 |
| Os10t0577200-01 | Rice | cytosol, mitochondrion, plastid | 27.0 | 18.39 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834721 | UniProt:A0A178UU33 | ProteinID:AED95424.1 | ProteinID:AED95425.1 | ArrayExpress:AT5G46780 |
| EnsemblPlantsGene:AT5G46780 | RefSeq:AT5G46780 | TAIR:AT5G46780 | RefSeq:AT5G46780-TAIR-G | EnsemblPlants:AT5G46780.1 | TAIR:AT5G46780.1 |
| ProteinID:BAB08922.1 | EMBL:BT025787 | RefSeq:NP_199490.1 | RefSeq:NP_851143.1 | ProteinID:OAO96261.1 | PFAM:PF05678 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33783 | UniProt:Q9FIP7 | UniParc:UPI00000A33B1 |
| InterPro:VQ | SEG:seg | : | : | : | : |
Description
At5g46780 [Source:UniProtKB/TrEMBL;Acc:Q9FIP7]
Coordinates
chr5:+:18978953..18980183
Molecular Weight (calculated)
26111.6 Da
IEP (calculated)
10.584
GRAVY (calculated)
-0.879
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.