Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G114640.1 | |
| HORVU5Hr1G114660.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G111800.1 | Wheat | cytosol | 86.96 | 96.06 |
| TraesCS6D01G100700.1 | Wheat | cytosol | 86.73 | 95.81 |
| HORVU5Hr1G066810.2 | Barley | cytosol | 75.59 | 95.63 |
| TraesCS6B01G140000.1 | Wheat | cytosol | 87.07 | 95.59 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 83.83 | 89.42 |
| KXG35736 | Sorghum | cytosol | 82.61 | 88.85 |
| Zm00001d020664_P016 | Maize | cytosol | 79.38 | 83.67 |
| GSMUA_Achr10P... | Banana | cytosol | 54.29 | 77.06 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 52.29 | 74.56 |
| CDY14071 | Canola | cytosol | 47.94 | 70.26 |
| Bra028722.1-P | Field mustard | cytosol | 47.71 | 70.05 |
| AT5G06680.1 | Thale cress | cytosol | 60.65 | 64.92 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 60.2 | 63.23 |
| CDY04999 | Canola | cytosol | 57.08 | 62.67 |
| KRH67085 | Soybean | cytosol | 57.53 | 61.14 |
| KRG95411 | Soybean | cytosol | 57.19 | 60.93 |
| CDX70079 | Canola | cytosol | 41.92 | 58.48 |
| Bra009216.1-P | Field mustard | cytosol | 41.92 | 58.48 |
| Solyc09g009140.2.1 | Tomato | nucleus | 57.75 | 55.4 |
| PGSC0003DMT400007029 | Potato | nucleus | 57.64 | 55.29 |
| CDX98945 | Canola | cytosol | 5.69 | 50.0 |
| HORVU2Hr1G086820.13 | Barley | cytosol, plastid | 16.28 | 19.57 |
| HORVU1Hr1G022100.2 | Barley | extracellular, vacuole | 14.72 | 17.65 |
Protein Annotations
| MapMan:20.1.2.1.3 | UniProt:A0A287TID9 | InterPro:GCP | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005815 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0043015 | EnsemblPlantsGene:HORVU6Hr1G020090 | EnsemblPlants:HORVU6Hr1G020090.2 | PFAM:PF04130 | PANTHER:PTHR19302 |
| PANTHER:PTHR19302:SF14 | UniParc:UPI000B488864 | SEG:seg | : | : | : |
Description
Gamma-tubulin complex component [Source:UniProtKB/TrEMBL;Acc:A0A287TID9]
Coordinates
chrchr6H:+:55717611..55720848
Molecular Weight (calculated)
100069.0 Da
IEP (calculated)
8.958
GRAVY (calculated)
-0.172
Length
897 amino acids
Sequence
(BLAST)
(BLAST)
001: YSFPSALKKK PKSTESRHGD SVLARSSSRP RFLLGRRRLH QGRPARTAAP AARRSPLAPS RAASDRTLAP ASSPMDDHQA GDLVKELVLR LVPAEPGGGG
101: RDAGGALRFA HRLLSSRLAP AVLPDEHALA ESVKRRLAAS GRPDDALAFA DLHAKLSARS RPASLWPLLY LLDSLSSHRR GAAAAAASCL PNLPTAAPPR
201: QASRAPGTPA GGVLLVSKDP DNIRGIALRE YTELVLDETE VSEATLVRDV LYACQGIDGR YVRYDKASDA YDLPDGVRVP ISTRTLVRKL CEVGWLFRKV
301: RGFISDNVSR LPSHAATEVG TVAQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSC VSGNYLSLRR LVVWLAEPAV KMRLMAVLVD GCRGLRGGGM
401: AGAIHGHAQH GDPMVQDFMG RLLRRVCSPL FEMVRSWVLE GELEDVFGEF FIVGQPVKAE SLWREGYLIQ SDMLPSFISP VLAQRILRTG KSINFLRVCC
501: DDNGWAEAAT EAAAYVGTTT SRGGLGYGQI DALEALVVEA AKRIDQRLMD VIHKRYRFKD HCLAIKRYLL LGQGDFVQYL MDVVGPELSE PANRISSFHL
601: AGLLETAIRA SDAQYDDRDI LDRIRVKMMD HGEGDRGWDV FSLEYDARVP LDTVFTASVM KMYLKIFNFL WKLKRVDHSL TGVWKTMKPN CIVSSPFYKE
701: GTSIRAQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSEEMD AAKDLDDLLM GHDKYLTSIV EKSLLGERSL GILRNLFALF DIILQFRSHA
801: DRWFERIYEL QLRGKSKPKT KSKETGSWLE GGRKAMIQLA GELFRKMGED LDSIAKDYTA SLDSFISQLP LQQHVDLKFL LFRLDFTEYY SRVSSNR
101: RDAGGALRFA HRLLSSRLAP AVLPDEHALA ESVKRRLAAS GRPDDALAFA DLHAKLSARS RPASLWPLLY LLDSLSSHRR GAAAAAASCL PNLPTAAPPR
201: QASRAPGTPA GGVLLVSKDP DNIRGIALRE YTELVLDETE VSEATLVRDV LYACQGIDGR YVRYDKASDA YDLPDGVRVP ISTRTLVRKL CEVGWLFRKV
301: RGFISDNVSR LPSHAATEVG TVAQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSC VSGNYLSLRR LVVWLAEPAV KMRLMAVLVD GCRGLRGGGM
401: AGAIHGHAQH GDPMVQDFMG RLLRRVCSPL FEMVRSWVLE GELEDVFGEF FIVGQPVKAE SLWREGYLIQ SDMLPSFISP VLAQRILRTG KSINFLRVCC
501: DDNGWAEAAT EAAAYVGTTT SRGGLGYGQI DALEALVVEA AKRIDQRLMD VIHKRYRFKD HCLAIKRYLL LGQGDFVQYL MDVVGPELSE PANRISSFHL
601: AGLLETAIRA SDAQYDDRDI LDRIRVKMMD HGEGDRGWDV FSLEYDARVP LDTVFTASVM KMYLKIFNFL WKLKRVDHSL TGVWKTMKPN CIVSSPFYKE
701: GTSIRAQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSEEMD AAKDLDDLLM GHDKYLTSIV EKSLLGERSL GILRNLFALF DIILQFRSHA
801: DRWFERIYEL QLRGKSKPKT KSKETGSWLE GGRKAMIQLA GELFRKMGED LDSIAKDYTA SLDSFISQLP LQQHVDLKFL LFRLDFTEYY SRVSSNR
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.