Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G140000.1 | Wheat | cytosol | 98.65 | 98.04 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 94.58 | 94.58 |
| TraesCS5D01G235900.1 | Wheat | cytosol | 94.95 | 93.45 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 90.15 | 87.04 |
| KXG35736 | Sorghum | cytosol | 89.16 | 86.81 |
| HORVU6Hr1G020090.2 | Barley | plastid | 95.81 | 86.73 |
| Zm00001d020664_P016 | Maize | cytosol | 85.96 | 82.02 |
| GSMUA_Achr10P... | Banana | cytosol | 59.73 | 76.74 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 57.76 | 74.56 |
| CDY14071 | Canola | cytosol | 53.08 | 70.42 |
| Bra028722.1-P | Field mustard | cytosol | 52.83 | 70.21 |
| AT5G06680.1 | Thale cress | cytosol | 66.01 | 63.96 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 65.64 | 62.41 |
| CDY04999 | Canola | cytosol | 62.68 | 62.3 |
| KRG95411 | Soybean | cytosol | 62.32 | 60.09 |
| KRH67085 | Soybean | cytosol | 62.32 | 59.95 |
| CDX70079 | Canola | cytosol | 45.07 | 56.92 |
| Bra009216.1-P | Field mustard | cytosol | 45.07 | 56.92 |
| Solyc09g009140.2.1 | Tomato | nucleus | 62.56 | 54.33 |
| PGSC0003DMT400007029 | Potato | nucleus | 62.44 | 54.22 |
| CDX98945 | Canola | cytosol | 6.03 | 48.04 |
| TraesCS2D01G355300.1 | Wheat | cytosol | 17.36 | 19.89 |
| TraesCS1D01G103700.1 | Wheat | extracellular, vacuole | 15.89 | 17.25 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G100700.1 | EnsemblPlantsGene:TraesCS6D01G100700 | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005815 | GO:GO:0005856 |
| GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | InterPro:GCP |
| PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 | PFAM:PF04130 | SEG:seg | MapMan:20.1.2.1.3 | : |
Description
No Description!
Coordinates
chr6D:+:63726135..63728669
Molecular Weight (calculated)
91099.8 Da
IEP (calculated)
7.031
GRAVY (calculated)
-0.118
Length
812 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHQAGDLV KELVLRLVPA DSGGALRFAH RLLSSRLAPA VLPDEHALAE SVKRRLAASG RPDDALAFAE LHSKLSARSR PASLWPLLYL LDSLSSHRRG
101: AASCLPDLPT AAPPRQASRA PGTPAGGVAL VSKDPDNIRE IALREYTELV LDETEVSEAT LVRDVLYACQ GIDGRYVRYD KASDTYDLPA GVHVPSSTRT
201: LVRKLCEVGW LFRKVRGFVS DNVSRLPSHA AAEVGTVAQA FCSALQEELS DYYKLLAVLE SYSLNPIPTP GSDSGVSGNY LSLRRLVVWL AEPAVKMRLM
301: AVLVDGCRGL RGGGMAGAIH GHAQHGDPMV QDFMGRLLRR VCSPLFEMVR SWVLEGELED VFGEFFIVGQ PVKAESLWRE GYLIQSDMLP SFISPVLAQR
401: ILRTGKSINF LRVCCDDNGW AEAATEAAAY VGTTTSRGGL GYGQIDALEA LVVEAAKRID QRLMDVIHKR YRFKDHCLAI KRYLLLGQGD FVQYLMDVVG
501: PELSEPANRI SSFHLAGLLE TAIRASDAQY DDRDILDRIR VKMMDHGEGD RGWDVFSLEY DARVPLDTVF TASVMKMYLK IFNFLWKLKR VDHSLTGVWK
601: TMKPNCIVSS PFYKEGTSIR AQFVSVLRKC QVLFNEMNHF VTNFQYYIMF EVLEVSWARF SEEMDAAKDL DDLLMGHDKY LTSIVEKSLL GERSLGILRN
701: LFALFDIILQ FRSHADRWFE RIYELQLRGK SKPKTKSKET GSWLEGGRKA MIQLAGELFR KMGEDLDSIA KDYTASLDSF ISQLPLQQHV DLKFLLFRLD
801: FTEYYSRVSS NK
101: AASCLPDLPT AAPPRQASRA PGTPAGGVAL VSKDPDNIRE IALREYTELV LDETEVSEAT LVRDVLYACQ GIDGRYVRYD KASDTYDLPA GVHVPSSTRT
201: LVRKLCEVGW LFRKVRGFVS DNVSRLPSHA AAEVGTVAQA FCSALQEELS DYYKLLAVLE SYSLNPIPTP GSDSGVSGNY LSLRRLVVWL AEPAVKMRLM
301: AVLVDGCRGL RGGGMAGAIH GHAQHGDPMV QDFMGRLLRR VCSPLFEMVR SWVLEGELED VFGEFFIVGQ PVKAESLWRE GYLIQSDMLP SFISPVLAQR
401: ILRTGKSINF LRVCCDDNGW AEAATEAAAY VGTTTSRGGL GYGQIDALEA LVVEAAKRID QRLMDVIHKR YRFKDHCLAI KRYLLLGQGD FVQYLMDVVG
501: PELSEPANRI SSFHLAGLLE TAIRASDAQY DDRDILDRIR VKMMDHGEGD RGWDVFSLEY DARVPLDTVF TASVMKMYLK IFNFLWKLKR VDHSLTGVWK
601: TMKPNCIVSS PFYKEGTSIR AQFVSVLRKC QVLFNEMNHF VTNFQYYIMF EVLEVSWARF SEEMDAAKDL DDLLMGHDKY LTSIVEKSLL GERSLGILRN
701: LFALFDIILQ FRSHADRWFE RIYELQLRGK SKPKTKSKET GSWLEGGRKA MIQLAGELFR KMGEDLDSIA KDYTASLDSF ISQLPLQQHV DLKFLLFRLD
801: FTEYYSRVSS NK
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.