Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G100700.1 | Wheat | cytosol | 98.04 | 98.65 |
| TraesCS6A01G111800.1 | Wheat | cytosol | 94.12 | 94.7 |
| TraesCS5B01G230400.1 | Wheat | cytosol | 94.25 | 93.33 |
| Os09t0446200-01 | Rice | cytosol, nucleus | 90.21 | 87.63 |
| KXG35736 | Sorghum | cytosol | 89.23 | 87.41 |
| HORVU6Hr1G020090.2 | Barley | plastid | 95.59 | 87.07 |
| Zm00001d020664_P016 | Maize | cytosol | 86.05 | 82.61 |
| GSMUA_Achr10P... | Banana | cytosol | 59.36 | 76.74 |
| GSMUA_Achr8P22770_001 | Banana | cytosol | 57.41 | 74.56 |
| CDY14071 | Canola | cytosol | 52.88 | 70.59 |
| Bra028722.1-P | Field mustard | cytosol | 52.63 | 70.38 |
| AT5G06680.1 | Thale cress | cytosol | 65.73 | 64.08 |
| VIT_08s0007g06730.t01 | Wine grape | cytosol | 65.61 | 62.76 |
| CDY04999 | Canola | cytosol | 62.42 | 62.42 |
| KRH67085 | Soybean | cytosol | 62.42 | 60.43 |
| KRG95411 | Soybean | cytosol | 62.18 | 60.33 |
| CDX70079 | Canola | cytosol | 44.8 | 56.92 |
| Bra009216.1-P | Field mustard | cytosol | 44.8 | 56.92 |
| Solyc09g009140.2.1 | Tomato | nucleus | 62.42 | 54.55 |
| PGSC0003DMT400007029 | Potato | nucleus | 62.3 | 54.44 |
| CDX98945 | Canola | cytosol | 6.0 | 48.04 |
| TraesCS2B01G375700.1 | Wheat | nucleus | 17.38 | 20.03 |
| TraesCS1B01G123000.1 | Wheat | extracellular, vacuole | 16.03 | 17.51 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G140000.1 | EnsemblPlantsGene:TraesCS6B01G140000 | GO:GO:0000226 | GO:GO:0000922 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005815 | GO:GO:0005856 |
| GO:GO:0007020 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043015 | InterPro:GCP |
| PANTHER:PTHR19302 | PANTHER:PTHR19302:SF14 | PFAM:PF04130 | SEG:seg | MapMan:20.1.2.1.3 | : |
Description
No Description!
Coordinates
chr6B:+:137380625..137383174
Molecular Weight (calculated)
91614.3 Da
IEP (calculated)
7.031
GRAVY (calculated)
-0.129
Length
817 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHQAGDLV KELVLRLVPA DSGRDAGGAL RFAHRLLSSR LAPAVLPDEH ALAESIKRRL AASGRPDDAL AFADLHSKLS ARSRPASLWP LLYLLDSLSS
101: HRRGAASCLP DLPTAAPPRH ATSRAPGTPA GGVALVSNDP DNIREIALRE YTELVLDETE VSEATLVRDV LYACQGIDGR YVRYDKASDT YDLPGGVRVP
201: GSTRTLVRKL CEVGWLFRKV RGFISDNVSR LPSHAATEVG TVAQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSG VSGNYLSLRR LVVWLAEPAV
301: KMRLMAVLVD GCRGLRGGGM AGAIHGHAQH GDPMVQDFMA RLLRRVCSPL FEMVRSWVLE GELEDVFGEF FIVGQPVKAE SLWREGYLIQ SDMLPSFISP
401: VLAQRILRTG KSINFLRVCC DDNGWAEAAT EAAAYVGTTT SRGGLGYGQI DALEALVVEA AKRIDQRLMD VIHKRYRFKD HCLAIKRYLL LGQGDFVQYL
501: MDVVGPELSE PANRISSFHL AGLLETAIRA SDAQYDDRDI LDRIRVKMMD HGDGDRGWDV FSLEYDARVP LDTVFTASVM KMYLKIFNFL WKLKRVDHSL
601: TGVWKTMKPN CIVSSPFYKE GTSIRAQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSEEMD AAKDLDDLLM GHDKYLTSIV EKSLLGERSL
701: GILRNLFALF DIILQFRSHA DRWFERIYEL QLRGKSKPKT KSKETGSWLE GGRKAMIQLA GELFRKMGED LDSIAKDYTA SLDSFISQLP LQQHVDLKFL
801: LFRLDFTEYY SRVSSNK
101: HRRGAASCLP DLPTAAPPRH ATSRAPGTPA GGVALVSNDP DNIREIALRE YTELVLDETE VSEATLVRDV LYACQGIDGR YVRYDKASDT YDLPGGVRVP
201: GSTRTLVRKL CEVGWLFRKV RGFISDNVSR LPSHAATEVG TVAQAFCSAL QEELSDYYKL LAVLESYSLN PIPTPGSDSG VSGNYLSLRR LVVWLAEPAV
301: KMRLMAVLVD GCRGLRGGGM AGAIHGHAQH GDPMVQDFMA RLLRRVCSPL FEMVRSWVLE GELEDVFGEF FIVGQPVKAE SLWREGYLIQ SDMLPSFISP
401: VLAQRILRTG KSINFLRVCC DDNGWAEAAT EAAAYVGTTT SRGGLGYGQI DALEALVVEA AKRIDQRLMD VIHKRYRFKD HCLAIKRYLL LGQGDFVQYL
501: MDVVGPELSE PANRISSFHL AGLLETAIRA SDAQYDDRDI LDRIRVKMMD HGDGDRGWDV FSLEYDARVP LDTVFTASVM KMYLKIFNFL WKLKRVDHSL
601: TGVWKTMKPN CIVSSPFYKE GTSIRAQFVS VLRKCQVLFN EMNHFVTNFQ YYIMFEVLEV SWARFSEEMD AAKDLDDLLM GHDKYLTSIV EKSLLGERSL
701: GILRNLFALF DIILQFRSHA DRWFERIYEL QLRGKSKPKT KSKETGSWLE GGRKAMIQLA GELFRKMGED LDSIAKDYTA SLDSFISQLP LQQHVDLKFL
801: LFRLDFTEYY SRVSSNK
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
Arabidopsis Description
GCP3Gamma-tubulin complex component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.